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scnpilot_solids2_trim150_scaffold_1876

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1876_1
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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2..901
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=crenarchaeote SCGC AAA261-N23 RepID=UPI000368D086
peptidase dimerisation domain-containing protein
Tax=RBG_16_Armatimonadetes_67_12_curated
scnpilot_solids2_trim150_scaffold_1876_2
Bacillus firmus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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901..1884
DNA (984bp) protein (328aa)
Succinate dehydrogenase subunit {ECO:0000313|EMBL:EWG09979.1}; TaxID=1307436 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus firmus DS1.;"
succinate dehydrogenase subunit; K06987 id=14632035 bin=bin9_gal15 species=Pelagibacterium halotolerans genus=Pelagibacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
succinate dehydrogenase subunit; K06987
scnpilot_solids2_trim150_scaffold_1876_3
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1961..2686)
DNA (726bp) protein (242aa)
Transcriptional regulator, GntR family n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KNW7_METEX
GntR family transcriptional regulator {ECO:0000313|EMBL:KGJ05432.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_1876_4
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2713..3177)
DNA (465bp) protein (155aa)
endoribonuclease L-PSP n=1 Tax=Dyadobacter beijingensis RepID=UPI00036517CB
Endoribonuclease L-PSP {ECO:0000313|EMBL:AKD04944.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
endoribonuclease L-PSP
scnpilot_solids2_trim150_scaffold_1876_5
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

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comp(3174..4784)
DNA (1611bp) protein (537aa)
lipoprotein NlpI, contains TPR repeats id=24464311 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
scnpilot_solids2_trim150_scaffold_1876_6
Oceanithermus profundus, Oceanithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

5072..6574
DNA (1503bp) protein (501aa)
Extracellular solute-binding protein family 5 n=1 Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U4Y2_OCEP5
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ADR37332.1}; Flags: Precursor;; TaxID=670487 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Oceanithermus.;" source="Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 /; 506).;"
scnpilot_solids2_trim150_scaffold_1876_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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6644..7567
DNA (924bp) protein (308aa)
Dipeptide transport system permease DppB id=3716364 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter permease; K02033 peptide/nickel transport system permease protein
Tax=GWA2_Rokubacteria_70_23_curated
scnpilot_solids2_trim150_scaffold_1876_8
Brevibacillus borstelensis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7560..8423
DNA (864bp) protein (288aa)
peptide ABC transporter permease n=1 Tax=Brevibacillus sp. phR RepID=UPI0003176B95
Oligopeptide ABC transporter permease {ECO:0000313|EMBL:EMT51531.1}; TaxID=1300222 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus borstelensis AK1.;"
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein
scnpilot_solids2_trim150_scaffold_1876_9
Bacillus firmus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8461..9474
DNA (1014bp) protein (338aa)
Succinate dehydrogenase subunit {ECO:0000313|EMBL:EWG09979.1}; TaxID=1307436 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus firmus DS1.;"
succinate dehydrogenase subunit; K06987 id=14632035 bin=bin9_gal15 species=Pelagibacterium halotolerans genus=Pelagibacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
succinate dehydrogenase subunit; K06987
scnpilot_solids2_trim150_scaffold_1876_10
unknown

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comp(9450..9602)
DNA (153bp) protein (51aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1876_11
Rhodococcus jostii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10961..11152
DNA (192bp) protein (64aa)
Mobile element protein n=1 Tax=Amycolatopsis azurea DSM 43854 RepID=M2NTH2_9PSEU
transposase
Probable transposase {ECO:0000313|EMBL:ABG95053.1}; TaxID=101510 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus jostii (strain RHA1).;"
scnpilot_solids2_trim150_scaffold_1876_12
Pseudomonas sp. GM33, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11228..11599)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM33 RepID=J2YR51_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EJM43403.1}; Flags: Precursor;; TaxID=1144329 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM33.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1876_13
unknown

Not on your lists

11918..12262
DNA (345bp) protein (115aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1876_14
unknown

Not on your lists

comp(12765..12926)
DNA (162bp) protein (54aa)

This feature has no annotations

Displaying 14 items

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