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scnpilot_solids2_trim150_scaffold_168

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Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_168_1
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..1546
DNA (1545bp) protein (515aa)
Amino acid transporter n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQT4_9GAMM
Amino acid permease {ECO:0000313|EMBL:KGI76799.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
amino acid transporter
scnpilot_solids2_trim150_scaffold_168_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1715..2812)
DNA (1098bp) protein (366aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NT70_9GAMM
diguanylate cyclase (GGDEF) domain-containing protein
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AGG90686.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_168_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3083..4981
DNA (1899bp) protein (633aa)
Glycyl aminopeptidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBP2_9GAMM
Glycyl aminopeptidase {ECO:0000313|EMBL:EIL96883.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glycyl aminopeptidase
scnpilot_solids2_trim150_scaffold_168_trna_1
unknown

Not on your lists

5211..5284
DNA (74bp)
transferRNA Arg
scnpilot_solids2_trim150_scaffold_168_4
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5586..5804
DNA (219bp) protein (73aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6F0_GEOUR
hypothetical protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
scnpilot_solids2_trim150_scaffold_168_5
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5801..6094
DNA (294bp) protein (98aa)
Putative uncharacterized protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IUU5_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EGW21630.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_168_trna_2
unknown

Not on your lists

6160..6232
DNA (73bp)
transferRNA Arg
scnpilot_solids2_trim150_scaffold_168_6
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6306..6476
DNA (171bp) protein (57aa)
Transposase IS3/IS911 family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2C6_THIK1
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ADG31294.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
scnpilot_solids2_trim150_scaffold_168_7
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6672..7223
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8TA68_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIT70768.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
putative DNA-binding protein
scnpilot_solids2_trim150_scaffold_168_8
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7238..8209
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZGB1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIT70767.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
anti-FecI sigma factor FecR
scnpilot_solids2_trim150_scaffold_168_9
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8307..11111
DNA (2805bp) protein (935aa)
Outer membrane receptor protein n=1 Tax=Caulobacter sp. AP07 RepID=J2H0K8_9CAUL rbh
Outer membrane receptor protein {ECO:0000313|EMBL:EJL36320.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
outer membrane receptor (OMR) family protein; K02014 iron complex outermembrane recepter protein rbh
scnpilot_solids2_trim150_scaffold_168_10
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11220..11699
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2Q7S6_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL36322.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
scnpilot_solids2_trim150_scaffold_168_11
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11718..13646
DNA (1929bp) protein (643aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltransferase {ECO:0000313|EMBL:ACX94892.1}; EC=2.3.2.2 {ECO:0000313|EMBL:ACX94892.1};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Gamma-glutamyltransferase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KVW5_HALNC
scnpilot_solids2_trim150_scaffold_168_12
Corynebacterium singulare, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13941..15254
DNA (1314bp) protein (438aa)
alpha-ketoglutarate transporter n=1 Tax=Corynebacterium bovis RepID=UPI0002192A4A
Major Facilitator Superfamily transporter {ECO:0000313|EMBL:AJI77716.1}; TaxID=161899 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium singulare.;"
hypothetical protein; K03761 MFS transporter, MHS family, alpha-ketoglutarate permease
scnpilot_solids2_trim150_scaffold_168_13
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15436..17376)
DNA (1941bp) protein (647aa)
Para-aminobenzoate synthase, aminase component {ECO:0000313|EMBL:BAQ17250.1}; EC=2.6.1.85 {ECO:0000313|EMBL:BAQ17250.1};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
pabB; para-aminobenzoate synthetase component I protein (EC:4.1.3.-); K03342 para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035FB561
scnpilot_solids2_trim150_scaffold_168_14
Streptomyces aurantiacus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17622..18530
DNA (909bp) protein (303aa)
polysaccharide deacetylase n=1 Tax=Amycolatopsis nigrescens RepID=UPI0003815F0D
Putative Chitin deacetylase 1 {ECO:0000313|EMBL:EPH40230.1}; TaxID=1286094 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces aurantiacus JA 4570.;"
polysaccharide deacetylase rbh
scnpilot_solids2_trim150_scaffold_168_15
Rhodococcus sp. YK2, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18527..19186
DNA (660bp) protein (220aa)
Genes for alpha and beta subunits of terminal dioxygenase component, hypothetical protein, hydrolase, extradiol dioxygenase, hypothetical protein, ferredoxin-like protein, hypothetical protein, partial and complete cds n=1 Tax=Rhodococcus sp. YK2 RepID=Q8L175_9NOCA
Genes for alpha and beta subunits of terminal dioxygenase component, hypothetical protein, hydrolase, extradiol dioxygenase, hypothetical protein, ferredoxin-like protein, hypothetical protein, partial ... {ECO:0000313|EMBL:BAC00809.1}; TaxID=169536 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. YK2.;"
nicotinamidase-like amidase
scnpilot_solids2_trim150_scaffold_168_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19262..21154
DNA (1893bp) protein (631aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Nuclease-like protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WF78_9GAMM
nuclease-like protein
scnpilot_solids2_trim150_scaffold_168_17
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21486..22811
DNA (1326bp) protein (442aa)
dipeptidase; K01273 membrane dipeptidase [EC:3.4.13.19]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036EFB7B
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
scnpilot_solids2_trim150_scaffold_168_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22840..23895
DNA (1056bp) protein (352aa)
Asparaginase n=1 Tax=Rhodanobacter denitrificans RepID=M4NNS6_9GAMM
asparaginase
Asparaginase {ECO:0000313|EMBL:AGG89331.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_168_19
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24218..25366)
DNA (1149bp) protein (383aa)
Peptidase M19, renal dipeptidase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RXY4_9SPHN rbh
peptidase M19, renal dipeptidase rbh
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
scnpilot_solids2_trim150_scaffold_168_20
Pseudomonas sp. GM55, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25744..27105)
DNA (1362bp) protein (454aa)
Probable D-serine dehydratase {ECO:0000256|HAMAP-Rule:MF_01030}; EC=4.3.1.18 {ECO:0000256|HAMAP-Rule:MF_01030};; D-serine deaminase {ECO:0000256|HAMAP-Rule:MF_01030}; TaxID=1144333 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM55.;"
dsdA; D-serine dehydratase (EC:4.3.1.18); K01753 D-serine dehydratase [EC:4.3.1.18] rbh
Probable D-serine dehydratase n=1 Tax=Pseudomonas sp. GM55 RepID=J2SHI0_9PSED rbh
scnpilot_solids2_trim150_scaffold_168_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27185..28501)
DNA (1317bp) protein (439aa)
Xaa-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582}; Short=X-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279};; EC=3.4.13.9 {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582};; Imidodipeptidase {ECO:0000256|HAMAP-Rule:MF_01279}; Proline dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Xaa-Pro dipeptidase (EC:3.4.13.9)
Xaa-Pro dipeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1T4_9GAMM
scnpilot_solids2_trim150_scaffold_168_22
Pseudomonas sp. FH1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28553..29344)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Pseudomonas fluorescens RepID=UPI00030549C7
Peptidase A1 pepsin {ECO:0000313|EMBL:ETK14303.1}; TaxID=1284392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FH1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_168_23
Deinococcus swuensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(29356..31083)
DNA (1728bp) protein (576aa)
5-oxoprolinase (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14] rbh
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Thermus thermophilus (strain SG0.5JP17-16) RepID=F6DIP2_THETG rbh
Methylhydantoinase {ECO:0000313|EMBL:AIZ45198.1}; TaxID=1182571 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus swuensis.;"
scnpilot_solids2_trim150_scaffold_168_24
Deinococcus swuensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(31080..33167)
DNA (2088bp) protein (696aa)
5-oxoprolinase (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14] rbh
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000362D5B1 rbh
5-oxoprolinase {ECO:0000313|EMBL:AIZ45197.1}; TaxID=1182571 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus swuensis.;"
scnpilot_solids2_trim150_scaffold_168_25
Shewanella woodyi, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33287..35635)
DNA (2349bp) protein (783aa)
TonB-dependent receptor n=1 Tax=Shewanella woodyi (strain ATCC 51908 / MS32) RepID=B1KGE9_SHEWM rbh
TonB-dependent receptor rbh
TonB-dependent receptor {ECO:0000313|EMBL:ACA88286.1}; Flags: Precursor;; TaxID=392500 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella woodyi (strain ATCC 51908 / MS32).;"
scnpilot_solids2_trim150_scaffold_168_26
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35776..38460)
DNA (2685bp) protein (895aa)
transcriptional regulator n=1 Tax=Xanthomonas sacchari RepID=UPI000262B4BA rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU83612.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
transcriptional regulator, LuxR family protein; K03556 LuxR family transcriptional regulator, maltose regulon positive regulatory protein rbh
scnpilot_solids2_trim150_scaffold_168_27
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38715..40046
DNA (1332bp) protein (444aa)
Permease for cytosine/purines uracil thiamine allantoin n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3X6_9SPHN rbh
Thiamine permease {ECO:0000313|EMBL:KFI24799.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
cytosine/purines uracil thiamine allantoin permease; K10974 cytosine permease
scnpilot_solids2_trim150_scaffold_168_28
gamma proteobacterium IMCC3088, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40128..40964)
DNA (837bp) protein (279aa)
Regulatory protein, TetR n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3L1W1_9GAMM
Regulatory protein, TetR {ECO:0000313|EMBL:EGG29639.1}; TaxID=876044 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="gamma proteobacterium IMCC3088.;"
TetR family transcriptional regulator
Displaying items 1-30 of 66 in total

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