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scnpilot_solids2_trim150_scaffold_211

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_211_1
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1226
DNA (1224bp) protein (408aa)
Acyltransferase 3 n=2 Tax=Oligotropha carboxidovorans RepID=B6JKC1_OLICO rbh
putative transmembrane protein rbh
Putative transmembrane protein {ECO:0000313|EMBL:AEI08244.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_211_2
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1404..1937)
DNA (534bp) protein (178aa)
petA; ubiquinol-cytochrome c reductase iron-sulfur subunit (EC:1.10.2.2); K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2]
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EUD5_BRASB
scnpilot_solids2_trim150_scaffold_211_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2024..3157)
DNA (1134bp) protein (378aa)
Protein translocase subunit SecY n=1 Tax=Rhodovulum sp. PH10 RepID=J6J928_9RHOB
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
preprotein translocase SECY subunit; K03076 preprotein translocase subunit SecY
scnpilot_solids2_trim150_scaffold_211_4
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3103..3354)
DNA (252bp) protein (84aa)
Protein translocase subunit SecY n=1 Tax=Rhodovulum sp. PH10 RepID=J6J928_9RHOB
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
scnpilot_solids2_trim150_scaffold_211_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3524..3979)
DNA (456bp) protein (152aa)
Transcriptional regulator of copper-responsive regulon genes n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ATN6_AZOBR
Transcriptional regulator, MerR family {ECO:0000313|EMBL:CDP50002.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
cueR; transcriptional regulator of copper-responsive regulon genes
scnpilot_solids2_trim150_scaffold_211_6
Burkholderia sp. KJ006, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4055..4777)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. KJ006 RepID=I2DZ15_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFJ89891.1}; TaxID=416344 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. KJ006.;"
scnpilot_solids2_trim150_scaffold_211_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4883..5182)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFJ9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64998.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_211_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5543..6193)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFK0_NITHX rbh
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:KIZ44798.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_211_9
unknown

Not on your lists

comp(6506..6631)
DNA (126bp) protein (42aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_211_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6740..7117
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFK2_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64995.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_211_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7193..8476
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFK3_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE64994.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_211_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9964..10518
DNA (555bp) protein (185aa)
Sigma-24 n=3 Tax=Oligotropha carboxidovorans RepID=B6JKC4_OLICO rbh
putative RNA polymerase sigma factor protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily rbh
Putative RNA polymerase sigma factor protein {ECO:0000313|EMBL:AEI08239.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_211_13
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10515..11156
DNA (642bp) protein (214aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JKC5_OLICO rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI08238.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_211_14
unknown

Not on your lists

11367..11618
DNA (252bp) protein (84aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_211_15
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11722..12003
DNA (282bp) protein (94aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BQZ2_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI08236.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_211_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12520..14037
DNA (1518bp) protein (506aa)
Membrane fusion protein CusB n=2 Tax=Oligotropha carboxidovorans RepID=B6JKC7_OLICO rbh
secretion protein HlyD rbh
Cation efflux system protein CusB {ECO:0000313|EMBL:CEG10178.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids2_trim150_scaffold_211_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14034..17234
DNA (3201bp) protein (1067aa)
Heavy metal efflux pump CusA n=2 Tax=Oligotropha carboxidovorans RepID=F8BJG6_OLICM rbh
Cation efflux system protein CusA {ECO:0000313|EMBL:CEG10177.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
cusA2; heavy metal efflux pump CusA rbh
scnpilot_solids2_trim150_scaffold_211_18
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17366..17767
DNA (402bp) protein (134aa)
Cation efflux system protein CusA n=3 Tax=Oligotropha carboxidovorans RepID=B6JKC8_OLICO
Bradyrhizobium elkanii strain UASWS1015 Contig152, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52997.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein; K07810 Cu(I)/Ag(I) efflux system periplasmic protein CusF
scnpilot_solids2_trim150_scaffold_211_19
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17940..19310
DNA (1371bp) protein (457aa)
CumA n=2 Tax=Oligotropha carboxidovorans RepID=B6JKC9_OLICO rbh
Bradyrhizobium elkanii strain UASWS1015 Contig152, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52998.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
multicopper oxidase rbh
scnpilot_solids2_trim150_scaffold_211_20
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19334..19777
DNA (444bp) protein (148aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=B6JKD0_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI08231.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_211_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19948..21258)
DNA (1311bp) protein (437aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002EE5578 rbh
hypothetical protein rbh
Tax=GWA2_Rokubacteria_73_35_curated
scnpilot_solids2_trim150_scaffold_211_22
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21281..21952)
DNA (672bp) protein (224aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QST7_9BRAD
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EIG62843.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
putative methyltransferase
scnpilot_solids2_trim150_scaffold_211_23
unknown

Not on your lists

22084..22791
DNA (708bp) protein (236aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_211_24
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22622..23233)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002FDF8EA rbh
Transcription-repair coupling factor (Superfamily II helicase) {ECO:0000313|EMBL:ERF82197.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
cytochrome c family protein
scnpilot_solids2_trim150_scaffold_211_25
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23230..24420)
DNA (1191bp) protein (397aa)
6-pyruvoyl tetrahydrobiopterin synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HCJ9_9BRAD rbh
6-pyruvoyl tetrahydrobiopterin synthase {ECO:0000313|EMBL:ERF82196.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
putative transmembrane protein
scnpilot_solids2_trim150_scaffold_211_26
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24516..24851)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P013_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS31763.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_211_27
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24884..26812)
DNA (1929bp) protein (643aa)
Molybdopterin-guanine dinucleotide biosynthesis protein B n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1II64_9BRAD rbh
Molybdopterin-guanine dinucleotide biosynthesis protein B {ECO:0000313|EMBL:ERF82194.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
multicopper oxidase rbh
scnpilot_solids2_trim150_scaffold_211_28
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26841..27170)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HBP0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF82193.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_211_29
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27354..28064)
DNA (711bp) protein (237aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BQX9_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI08223.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_211_30
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28061..29047)
DNA (987bp) protein (329aa)
Putative methyltransferase n=2 Tax=Oligotropha carboxidovorans RepID=F8BQX8_OLICM rbh
Bradyrhizobium elkanii strain UASWS1015 Contig152, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53007.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
putative methyltransferase rbh
Displaying items 1-30 of 76 in total

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