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scnpilot_solids2_trim150_scaffold_253

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_253_1
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1..1737
DNA (1737bp) protein (579aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036597E7
membrane-bound dehydrogenase domain-containing protein
Membrane-bound dehydrogenase domain protein {ECO:0000313|EMBL:AEI50567.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_solids2_trim150_scaffold_253_2
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1782..4043
DNA (2262bp) protein (754aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036597E7
membrane-bound dehydrogenase domain-containing protein rbh
Membrane-bound dehydrogenase domain protein {ECO:0000313|EMBL:AEI50567.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_solids2_trim150_scaffold_253_3
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4191..5471
DNA (1281bp) protein (427aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y331_PEDHD rbh
major facilitator superfamily protein; K08191 MFS transporter, ACS family, hexuronate transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACU03244.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_solids2_trim150_scaffold_253_4
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

5581..6477
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VTM0_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT92963.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_solids2_trim150_scaffold_253_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

6675..7265
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000372B598
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACT92629.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_solids2_trim150_scaffold_253_6
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7373..8572
DNA (1200bp) protein (400aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC95908.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
FecR protein id=2885643 bin=GWF2_Bacteroidetes_40_14 species=Pedobacter heparinus genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes
anti-FecI sigma factor FecR
scnpilot_solids2_trim150_scaffold_253_7
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8843..12199
DNA (3357bp) protein (1119aa)
TonB-denpendent receptor n=1 Tax=Dyadobacter beijingensis RepID=UPI0003805640
TonB-dependent receptor plug {ECO:0000313|EMBL:ACT92637.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
TonB-dependent receptor plug
scnpilot_solids2_trim150_scaffold_253_8
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12230..14002
DNA (1773bp) protein (591aa)
RagB/SusD domain-containing protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0IVJ6_CYCMS
RagB/SusD domain-containing protein
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AEL24192.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
scnpilot_solids2_trim150_scaffold_253_9
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

14231..15694
DNA (1464bp) protein (488aa)
Transcription-repair coupling factor n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7V8I1_9BACT rbh
Neutral/alkaline non-lysosomal ceramidase rbh
Tax=CG_Arma_01
scnpilot_solids2_trim150_scaffold_253_10
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

15827..17224
DNA (1398bp) protein (466aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037F135F
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI48321.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_solids2_trim150_scaffold_253_11
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

17268..17843
DNA (576bp) protein (192aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VTM0_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT92963.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_solids2_trim150_scaffold_253_12
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17865..18560
DNA (696bp) protein (232aa)
Putative uncharacterized protein id=4180771 bin=GWF2_Bacteroidetes_49_14 species=Dysgonomonas gadei genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
hypothetical protein
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_solids2_trim150_scaffold_253_13
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18758..19330
DNA (573bp) protein (191aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YE34_9SPHI
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EHQ25212.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
ECF subfamily RNA polymerase sigma-24 subunit
scnpilot_solids2_trim150_scaffold_253_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19436..20632
DNA (1197bp) protein (399aa)
Anti-FecI sigma factor, FecR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TM28_NIAKG rbh
anti-FecI sigma factor FecR rbh
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:AEV99801.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_253_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20838..24248
DNA (3411bp) protein (1137aa)
TonB-dependent receptor plug n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TM75_NIAKG
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:AEV99848.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_253_16
Anditalea andensis, Anditalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

24267..25790
DNA (1524bp) protein (508aa)
starch-binding protein n=1 Tax=Niabella aurantiaca RepID=UPI000379376E
Uncharacterized protein {ECO:0000313|EMBL:KEO73478.1}; TaxID=1048983 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Anditalea.;" source="Anditalea andensis.;"
RagB/SusD domain-containing protein
scnpilot_solids2_trim150_scaffold_253_17
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25817..26593
DNA (777bp) protein (259aa)
ial:IALB_2990 Cell wall anchor domain protein id=719743 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
Uncharacterized protein {ECO:0000313|EMBL:KEQ28158.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
scnpilot_solids2_trim150_scaffold_253_18
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26642..27754
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000365E11E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE52314.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
scnpilot_solids2_trim150_scaffold_253_19
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

27809..29191
DNA (1383bp) protein (461aa)
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QG60_SPILD rbh
Glutamine--scyllo-inositol aminotransferase {ECO:0000313|EMBL:AKD55452.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
DegT/DnrJ/EryC1/StrS aminotransferase rbh
scnpilot_solids2_trim150_scaffold_253_20
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

29188..30594
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0IVJ5_CYCMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL24191.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
scnpilot_solids2_trim150_scaffold_253_21
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

30677..32119
DNA (1443bp) protein (481aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037F135F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB36666.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_solids2_trim150_scaffold_253_22
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32218..33561
DNA (1344bp) protein (448aa)
glycoside hydrolase family alpha-L-fucosidase; K01206 alpha-L-fucosidase [EC:3.2.1.51] rbh
Glycoside hydrolase, family 29 (Alpha-L-fucosidase) n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021F2_SOLUE rbh
Tax=GWB2_Bacteroidetes_41_8_curated
scnpilot_solids2_trim150_scaffold_253_23
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33604..34980
DNA (1377bp) protein (459aa)
Lipolytic protein G-D-S-L family id=2178102 bin=GWE2_Bacteroidetes_42_39 species=Pedobacter heparinus genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good + rbh
endoglucanase rbh
Tax=GWE2_Bacteroidetes_42_39_curated
scnpilot_solids2_trim150_scaffold_253_24
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

35816..37165
DNA (1350bp) protein (450aa)
Peptidase M20 n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5C317_9BACT rbh
Peptidase M20 {ECO:0000313|EMBL:ERM83306.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
amidohydrolase rbh
scnpilot_solids2_trim150_scaffold_253_25
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

37278..38729
DNA (1452bp) protein (484aa)
Uncharacterized protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0IYY8_CYCMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL28133.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
scnpilot_solids2_trim150_scaffold_253_26
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

38811..41936
DNA (3126bp) protein (1042aa)
AsmA family protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KXQ8_SOLCM rbh
AsmA family protein rbh
AsmA family protein {ECO:0000313|EMBL:AFD05473.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_solids2_trim150_scaffold_253_27
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(42203..42787)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002E2FA07
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK02543.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
scnpilot_solids2_trim150_scaffold_253_28
unknown

Not on your lists

42798..42932
DNA (135bp) protein (45aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_253_29
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(43058..44074)
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036AD123
Contig31, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77663.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
LacI family transcriptional regulator
scnpilot_solids2_trim150_scaffold_253_30
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

44293..45636
DNA (1344bp) protein (448aa)
NADH-dependent dehydrogenase n=1 Tax=Spirosoma luteum RepID=UPI0003734578
Dehydrogenase {ECO:0000313|EMBL:AKD54920.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
oxidoreductase domain-containing protein
Displaying items 1-30 of 42 in total

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