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scnpilot_solids2_trim150_scaffold_348

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_348_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1484)
DNA (1482bp) protein (494aa)
Aldehyde dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWQ7_9GAMM
NAD-dependent aldehyde dehydrogenase
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:AGG89514.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_348_trna_1
unknown

Not on your lists

1760..1833
DNA (74bp)
transferRNA Arg
scnpilot_solids2_trim150_scaffold_348_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1886..3451)
DNA (1566bp) protein (522aa)
UPF0061 protein UUC_05136 n=1 Tax=Rhodanobacter denitrificans RepID=I4WWQ8_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_348_3
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3517..5094)
DNA (1578bp) protein (526aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QWG1_RALPI rbh
Uncharacterized protein {ECO:0000313|EMBL:AGW93611.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
phospholipase D/transphosphatidylase
scnpilot_solids2_trim150_scaffold_348_4
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5309..6046)
DNA (738bp) protein (246aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
pseudouridine synthase family protein (EC:5.4.99.-)
pseudouridine synthase n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003AAB721
scnpilot_solids2_trim150_scaffold_348_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6043..7113)
DNA (1071bp) protein (357aa)
16S RNA G1207 methylase RsmC n=1 Tax=Rhodanobacter denitrificans RepID=I4WWR3_9GAMM
16S RNA G1207 methylase RsmC
16S RNA G1207 methylase RsmC {ECO:0000313|EMBL:AGG89521.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_348_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7136..8008)
DNA (873bp) protein (291aa)
Virulence protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPB1_9GAMM
Virulence protein {ECO:0000313|EMBL:EIL89052.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
acvB; virulence protein
scnpilot_solids2_trim150_scaffold_348_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8026..10632)
DNA (2607bp) protein (869aa)
hypothetical protein; K14205 phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPB0_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL89051.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_348_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10881..12881)
DNA (2001bp) protein (667aa)
Putative oligopeptide transporter, OPT family n=1 Tax=Rhodanobacter denitrificans RepID=M4NIP2_9GAMM
putative oligopeptide transporter, OPT family
Putative oligopeptide transporter, OPT family {ECO:0000313|EMBL:AGG89523.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_348_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13058..13945)
DNA (888bp) protein (296aa)
Pseudouridine synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W477_9GAMM
23S RNA-specific pseudouridylate synthase
Pseudouridine synthase {ECO:0000313|EMBL:EIL94268.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_348_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13986..15335)
DNA (1350bp) protein (450aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWU2_9GAMM
Major facilitator superfamily protein {ECO:0000313|EMBL:EIL91683.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
major facilitator superfamily protein
scnpilot_solids2_trim150_scaffold_348_11
unknown

Not on your lists

comp(15681..15776)
DNA (96bp) protein (32aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_348_12
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15914..16216
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000345F094
Uncharacterized protein {ECO:0000313|EMBL:KGI78091.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
scnpilot_solids2_trim150_scaffold_348_13
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16364..17956)
DNA (1593bp) protein (531aa)
Peptidase M28 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBE2_9GAMM
NODE_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96240.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
peptidase M28
scnpilot_solids2_trim150_scaffold_348_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18168..19010)
DNA (843bp) protein (281aa)
Metal-dependent hydrolase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIM8_9GAMM rbh
Metal-dependent hydrolase {ECO:0000313|EMBL:EIL87069.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
metal-dependent hydrolase
scnpilot_solids2_trim150_scaffold_348_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19415..20662
DNA (1248bp) protein (416aa)
Aminotransferase AlaT {ECO:0000313|EMBL:EIL97706.1}; EC=2.6.1.2 {ECO:0000313|EMBL:EIL97706.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Aminotransferase AlaT n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE15_9GAMM
aspartate/tyrosine/aromatic aminotransferase
scnpilot_solids2_trim150_scaffold_348_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20850..21587
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VWK7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91598.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_348_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21645..22487
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQ02_9GAMM
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:AGG89603.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_348_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22608..24452)
DNA (1845bp) protein (615aa)
Multidrug ABC transporter ATPase/permease n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRJ3_9GAMM rbh
Multidrug ABC transporter ATPase/permease {ECO:0000313|EMBL:EIM02085.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ABC-type multidrug transport system, ATPase and permease component rbh
scnpilot_solids2_trim150_scaffold_348_19
Burkholderia grimmiae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24648..25061)
DNA (414bp) protein (138aa)
DoxX n=1 Tax=Burkholderia sp. YI23 RepID=G8MJR9_9BURK
Membrane protein {ECO:0000313|EMBL:KDR35240.1}; TaxID=1071679 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia grimmiae.;"
doxX; DoxX protein; K15977 putative oxidoreductase
scnpilot_solids2_trim150_scaffold_348_20
Pseudogymnoascus pannorum, Pseudogymnoascus, Leotiomycetes, Ascomycota, Fungi

Not on your lists

comp(25276..26430)
DNA (1155bp) protein (385aa)
Ankyrin repeat domain-containing protein 50 n=1 Tax=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) RepID=A8NMP7_COPC7
Uncharacterized protein {ECO:0000313|EMBL:KFY18207.1}; TaxID=1420902 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Leotiomycetes incertae sedis; Pseudeurotiaceae; Pseudogymnoascus.;" source="Pseudogymnoascus pannorum VKM F-4246.;"
ankyrin repeat domain-containing protein 50
scnpilot_solids2_trim150_scaffold_348_21
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26452..28557)
DNA (2106bp) protein (702aa)
Uncharacterized protein n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1HA79_9PSEU rbh
Uncharacterized protein {ECO:0000313|EMBL:EOD60590.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_348_22
Komagataeibacter hansenii, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28917..31175
DNA (2259bp) protein (753aa)
dipeptidyl peptidase IV; K01278 dipeptidyl-peptidase 4 [EC:3.4.14.5]
Putative exported dipeptidyl peptidase IV n=1 Tax=Gluconacetobacter hansenii ATCC 23769 RepID=D5QIG2_GLUHA
Putative exported dipeptidyl peptidase IV {ECO:0000313|EMBL:EFG83188.1}; TaxID=714995 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter hansenii ATCC 23769.;"
scnpilot_solids2_trim150_scaffold_348_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31298..31906)
DNA (609bp) protein (203aa)
Antioxidant, AhpC/TSA family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCX0_9GAMM
Antioxidant, AhpC/TSA family protein {ECO:0000313|EMBL:EIL97311.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Peroxiredoxin
scnpilot_solids2_trim150_scaffold_348_24
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31998..33281)
DNA (1284bp) protein (428aa)
dmpA; aminopeptidase; K01266 D-aminopeptidase [EC:3.4.11.19] rbh
Aminopeptidase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FYC1_SORC5 rbh
D-aminopeptidase {ECO:0000313|EMBL:KGM51842.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
scnpilot_solids2_trim150_scaffold_348_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33586..34056
DNA (471bp) protein (157aa)
alkylhydroperoxidase AhpD family core domain protein id=12556323 bin=CNBR_ACIDO species=Rhodanobacter denitrificans genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
alkylhydroperoxidase AhpD family core domain protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
scnpilot_solids2_trim150_scaffold_348_26
Halomonas elongata, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34125..34919
DNA (795bp) protein (265aa)
short-chain dehydrogenase/reductase SDR (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CBV42032.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CBV42032.1};; TaxID=768066 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB; 2198 / 1H9).;"
oxidoreductase n=1 Tax=Xanthomonas sacchari RepID=UPI00026304A7
scnpilot_solids2_trim150_scaffold_348_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34933..35451
DNA (519bp) protein (173aa)
Peroxiredoxin n=1 Tax=Rhodanobacter denitrificans RepID=M4NFD0_9GAMM
Peroxiredoxin
Peroxiredoxin {ECO:0000313|EMBL:AGG89595.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_348_28
unknown

Not on your lists

35489..35878
DNA (390bp) protein (130aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_348_29
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(36004..36282)
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Pseudanabaena sp. PCC 6802 RepID=UPI000371FC82
Uncharacterized protein {ECO:0000313|EMBL:KIF21629.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
protein of unknown function DUF1778
Displaying items 1-30 of 39 in total

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