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scnpilot_solids2_trim150_scaffold_645

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_645_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1414)
DNA (1413bp) protein (471aa)
peptide chain release factor 3 n=1 Tax=Thiobacillus denitrificans RepID=UPI000376929E rbh
prfC; peptide chain release factor 3; K02837 peptide chain release factor 3
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids2_trim150_scaffold_645_2
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1670..3028
DNA (1359bp) protein (453aa)
Fis family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C84EC rbh
Fis family transcriptional regulator rbh
Fis family transcriptional regulator {ECO:0000313|EMBL:BAN34299.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
scnpilot_solids2_trim150_scaffold_645_3
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3025..6129)
DNA (3105bp) protein (1035aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379F2C6 rbh
cusA; RND family outer membrane copper/silver/drug transport protein rbh
Tax=RBG_16_Betaproteobacteria_56_24_curated
scnpilot_solids2_trim150_scaffold_645_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6132..7448)
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D89A1 rbh
heavy metal efflux system protein; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_645_5
unknown

Not on your lists

comp(7551..7844)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003743EC5
scnpilot_solids2_trim150_scaffold_645_6
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7964..8899)
DNA (936bp) protein (312aa)
copper-containing nitrite reductase (EC:1.7.2.1); K00368 nitrite reductase (NO-forming) [EC:1.7.2.1] rbh
Putative copper-containing nitrite reductase {ECO:0000313|EMBL:CAL63352.1}; EC=1.7.2.1 {ECO:0000313|EMBL:CAL63352.1};; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
nitrite reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D5783 rbh
scnpilot_solids2_trim150_scaffold_645_7
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8917..9312)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003613C40
cytochrome c, class IC:cytochrome c, class I; K00406 cytochrome c oxidase cbb3-type subunit III
Cytochrome c, class IC:Cytochrome c, class I {ECO:0000313|EMBL:CAD84836.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
scnpilot_solids2_trim150_scaffold_645_8
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9312..10004)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000372F17E rbh
cytochrome c, class I
Cytochrome c, class I {ECO:0000313|EMBL:CAD84837.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
scnpilot_solids2_trim150_scaffold_645_9
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10020..11075)
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D90A9 rbh
pan1; multicopper oxidase type 1
Multicopper oxidase type 1 {ECO:0000313|EMBL:CAD84838.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
scnpilot_solids2_trim150_scaffold_645_10
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12194..12964)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5BVG1_9GAMM
hypothetical protein
Tax=BJP_IG2103_Dechloromonas_63_51
scnpilot_solids2_trim150_scaffold_645_11
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13443..13583
DNA (141bp) protein (47aa)
IS3/IS407-type transposase n=2 Tax=Pseudomonas RepID=H7ESU5_PSEST
IS3/IS407-type transposase {ECO:0000313|EMBL:EHY76819.1}; TaxID=32042 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri ATCC 14405 = CCUG 16156.;"
transposase IS3/IS911; K07497 putative transposase
scnpilot_solids2_trim150_scaffold_645_12
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13580..13705
DNA (126bp) protein (42aa)
transposase IS1404 n=1 Tax=Burkholderia glumae RepID=UPI0002F38D30
Transposase IS3/IS911 {ECO:0000313|EMBL:AJK49901.1}; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
transposase IS3/IS911; K07497 putative transposase
scnpilot_solids2_trim150_scaffold_645_13
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13699..14547
DNA (849bp) protein (283aa)
Putative transposase n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U3B4R4_PSEAC rbh
Putative transposase {ECO:0000313|EMBL:GAD64824.1}; TaxID=1215092 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes NBRC 14159.;"
transposase rbh
scnpilot_solids2_trim150_scaffold_645_14
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14955..15623
DNA (669bp) protein (223aa)
integrase family protein id=12497432 bin=THIO_MID species=Methylosarcina fibrata genus=Methylosarcina taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tyrosine recombinase XerC {ECO:0000313|EMBL:GAO32690.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
integrase family protein
scnpilot_solids2_trim150_scaffold_645_trna_1
unknown

Not on your lists

comp(15651..15724)
DNA (74bp)
transferRNA Arg
scnpilot_solids2_trim150_scaffold_645_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16456..16713)
DNA (258bp) protein (86aa)
Phage transcriptional regulator, AlpA n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CKX6_VARPS
phage transcriptional regulator AlpA
Phage transcriptional regulator, AlpA {ECO:0000313|EMBL:ACS21127.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
scnpilot_solids2_trim150_scaffold_645_16

Not on your lists

comp(16829..17053)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003638244
Uncharacterized protein {ECO:0000313|EMBL:CBH97701.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
conjugal transfer protein
scnpilot_solids2_trim150_scaffold_645_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17050..18324)
DNA (1275bp) protein (425aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003694B75 rbh
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids2_trim150_scaffold_645_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18327..19340)
DNA (1014bp) protein (338aa)
conjugative transfer protein TrbG n=1 Tax=Thiobacillus denitrificans RepID=UPI00036410B2 rbh
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids2_trim150_scaffold_645_19
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19337..20044)
DNA (708bp) protein (236aa)
conjugal transfer protein TrbF n=1 Tax=Thiobacillus denitrificans RepID=UPI000365D7A3 rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:AJP47671.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
conjugal transfer protein TrbF
scnpilot_solids2_trim150_scaffold_645_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20071..21420)
DNA (1350bp) protein (450aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003826C00 rbh
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids2_trim150_scaffold_645_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21424..21687)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000370D5A2
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids2_trim150_scaffold_645_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21697..22425)
DNA (729bp) protein (243aa)
conjugal transfer protein TrbJ n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C0BFB rbh
conjugal transfer protein TrbJ rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids2_trim150_scaffold_645_23
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22422..24860)
DNA (2439bp) protein (813aa)
conjugal transfer protein TrbE n=1 Tax=Thiobacillus denitrificans RepID=UPI000365D4CA rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:AJP47674.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
trbE1; conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
scnpilot_solids2_trim150_scaffold_645_24
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24871..25155)
DNA (285bp) protein (95aa)
conjugal transfer protein TrbD n=1 Tax=Thiobacillus denitrificans RepID=UPI00036ED53C
putative conjugal transfer TrbD transmembrane protein; K03198 type IV secretion system protein VirB3
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
scnpilot_solids2_trim150_scaffold_645_25
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25152..25484)
DNA (333bp) protein (111aa)
conjugal transfer protein TrbC n=1 Tax=Thiobacillus denitrificans RepID=UPI0003665B36
Conjugal transfer protein TrbC {ECO:0000313|EMBL:AJP47676.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
scnpilot_solids2_trim150_scaffold_645_26
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25481..26497)
DNA (1017bp) protein (339aa)
conjugal transfer protein TrbB n=1 Tax=Thiobacillus denitrificans RepID=UPI000374E989 rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:AJP47677.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
scnpilot_solids2_trim150_scaffold_645_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26494..26979)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F80A4
CopG domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids2_trim150_scaffold_645_28
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26976..28967)
DNA (1992bp) protein (664aa)
conjugal transfer protein TraG n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C7ECF rbh
Conjugal transfer protein TraG {ECO:0000313|EMBL:AJP47679.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
Displaying 29 items

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