ggKbase home page

scnpilot_solids2_trim150_scaffold_221

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_221_1
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..1047)
-----------------
DNA (1047bp)
protein (349aa)
elongation factor Tu n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B47B9A rbh
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
elongation factor Tu rbh
scnpilot_solids2_trim150_scaffold_221_2
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1203..3317)
-----------------
DNA (2115bp)
protein (705aa)
Elongation factor G n=1 Tax=Microbacterium sp. TS-1 RepID=U2YP65_9MICO rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
fusA; translation elongation factors; K02355 elongation factor G rbh
scnpilot_solids2_trim150_scaffold_221_3
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3395..3865)
-----------------
DNA (471bp)
protein (157aa)
30S ribosomal protein S7 n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KC95_9MICO rbh
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
rpsG; ribosomal protein S7; K02992 small subunit ribosomal protein S7 rbh
scnpilot_solids2_trim150_scaffold_221_4
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3871..4239)
-----------------
DNA (369bp)
protein (123aa)
30S ribosomal protein S12 n=2 Tax=Microbacterium RepID=H8E530_9MICO
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
rpsL; ribosomal protein S12; K02950 small subunit ribosomal protein S12
scnpilot_solids2_trim150_scaffold_221_5
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4453..8397)
-----------------
DNA (3945bp)
protein (1315aa)
hypothetical protein n=1 Tax=Agromyces italicus RepID=UPI0003B6CA62 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJL34417.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical membrane protein
scnpilot_solids2_trim150_scaffold_221_6
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8394..8609)
-----------------
DNA (216bp)
protein (72aa)
XRE family transcriptional regulator n=1 Tax=Humibacter albus RepID=UPI0003B39664
Uncharacterized protein {ECO:0000313|EMBL:KJL22353.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
XRE family transcriptional regulator; K07727 putative transcriptional regulator
scnpilot_solids2_trim150_scaffold_221_7
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8611..9087)
-----------------
DNA (477bp)
protein (159aa)
transmembrane transporter n=1 Tax=Agromyces italicus RepID=UPI0003B34B19
Uncharacterized protein {ECO:0000313|EMBL:KJL34415.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
Integral membrane protein
scnpilot_solids2_trim150_scaffold_221_8
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9178..9801)
-----------------
DNA (624bp)
protein (208aa)
spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000375D948 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJL26004.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
spermidine/putrescine-binding periplasmic protein rbh
scnpilot_solids2_trim150_scaffold_221_9
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9875..10369)
-----------------
DNA (495bp)
protein (165aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034D8827
Uncharacterized protein {ECO:0000313|EMBL:KJL29791.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_221_10
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10409..11440)
-----------------
DNA (1032bp)
protein (344aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034B1902 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJL29792.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
ABC transporter
scnpilot_solids2_trim150_scaffold_221_11
unknown

Not on your lists

comp(11543..11695)
-----------------
DNA (153bp)
protein (51aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_221_12
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11953..12543)
-----------------
DNA (591bp)
protein (197aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KGM6_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EQM73295.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
scnpilot_solids2_trim150_scaffold_221_13
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12546..12872)
-----------------
DNA (327bp)
protein (109aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KEH4_9MICO
PadR family transcriptional regulator {ECO:0000313|EMBL:EYT60046.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
PadR-like family transcriptional regulator; K10947 PadR family transcriptional regulator, regulatory protein PadR
scnpilot_solids2_trim150_scaffold_221_14
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13094..14983)
-----------------
DNA (1890bp)
protein (630aa)
Maltodextrin glucosidase {ECO:0000313|EMBL:KJL26008.1}; EC=3.2.1.20 {ECO:0000313|EMBL:KJL26008.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
alpha-amylase; K01187 alpha-glucosidase [EC:3.2.1.20] rbh
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003762825 rbh
scnpilot_solids2_trim150_scaffold_221_15
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14999..15886)
-----------------
DNA (888bp)
protein (296aa)
maltooligosaccharides ABC transporter inner membrane subunit (EC:3.6.3.-) rbh
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00031B53E8 rbh
Contig_11, whole genome shotgun sequence {ECO:0000313|EMBL:KIP92983.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
scnpilot_solids2_trim150_scaffold_221_16
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15888..17504)
-----------------
DNA (1617bp)
protein (539aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002DC4A6C rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM73298.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
maltooligosaccharides ABC transporter inner membrane subunit; K10109 maltose/maltodextrin transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_221_17
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17580..18818)
-----------------
DNA (1239bp)
protein (413aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034A9411 rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EYT60049.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
extracellular solute-binding protein; K10108 maltose/maltodextrin transport system substrate-binding protein rbh
scnpilot_solids2_trim150_scaffold_221_18
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19008..19496
-----------------
DNA (489bp)
protein (163aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F2B743
UPF0234 protein RS83_01366 {ECO:0000256|HAMAP-Rule:MF_00632}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein; K09767 hypothetical protein
scnpilot_solids2_trim150_scaffold_221_19
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19655..20302
-----------------
DNA (648bp)
protein (216aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KCM1_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EQM73302.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_221_20
unknown

Not on your lists

comp(20529..20945)
-----------------
DNA (417bp)
protein (139aa)
Uncharacterized protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TQ41_9MICO
scnpilot_solids2_trim150_scaffold_221_21
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21417..22409)
-----------------
DNA (993bp)
protein (331aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000347E2E1 rbh
Contig_11, whole genome shotgun sequence {ECO:0000313|EMBL:KIP92979.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
lysophospholipase rbh
scnpilot_solids2_trim150_scaffold_221_22
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22488..23867)
-----------------
DNA (1380bp)
protein (460aa)
NADPH-ferredoxin reductase FprA {ECO:0000313|EMBL:KJL26020.1}; EC=1.18.1.2 {ECO:0000313|EMBL:KJL26020.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
frp; NADPH-dependent glutamate synthase beta chain; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2] rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Microbacterium barkeri RepID=UPI0002F95895 rbh
scnpilot_solids2_trim150_scaffold_221_23
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23881..24942)
-----------------
DNA (1062bp)
protein (354aa)
Heptaprenyl diphosphate synthase component 2 {ECO:0000313|EMBL:KJL29800.1}; EC=2.5.1.30 {ECO:0000313|EMBL:KJL29800.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
geranylgeranyl pyrophosphate synthase; K00805 heptaprenyl diphosphate synthase [EC:2.5.1.30] rbh
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KGQ3_9MICO rbh
scnpilot_solids2_trim150_scaffold_221_24
Halomonas sp. BC04, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24994..26052)
-----------------
DNA (1059bp)
protein (353aa)
peptidase M28 n=1 Tax=Halomonas sp. KM-1 RepID=UPI000287DBF5
Peptidase M28 {ECO:0000313|EMBL:EWG97993.1}; TaxID=1403540 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. BC04.;"
yfbL_[H]; peptidase M28
scnpilot_solids2_trim150_scaffold_221_25
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26106..26546)
-----------------
DNA (441bp)
protein (147aa)
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
scnpilot_solids2_trim150_scaffold_221_26
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26551..27816)
-----------------
DNA (1266bp)
protein (422aa)
isochorismate synthase; K02552 menaquinone-specific isochorismate synthase [EC:5.4.4.2] rbh
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034DC9DF rbh
Contig_11, whole genome shotgun sequence {ECO:0000313|EMBL:KIP92973.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
scnpilot_solids2_trim150_scaffold_221_27
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27826..28389)
-----------------
DNA (564bp)
protein (188aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F09079
Uncharacterized protein {ECO:0000313|EMBL:KJL20582.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein; K07586 hypothetical protein
scnpilot_solids2_trim150_scaffold_221_28
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28595..29308
-----------------
DNA (714bp)
protein (238aa)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
ubiE; methylase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] rbh
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E61A11 rbh
scnpilot_solids2_trim150_scaffold_221_29
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29396..30286)
-----------------
DNA (891bp)
protein (297aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KBT8_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM73309.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_221_30
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30296..31885
-----------------
DNA (1590bp)
protein (530aa)
Uncharacterized protein n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1MXJ6_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:ERG65285.1}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
hypothetical protein; K09760 DNA recombination protein RmuC rbh
Displaying items 1-30 of 70 in total

View Taxonomy