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scnpilot_solids2_trim150_scaffold_115

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_115_1
unknown

Not on your lists

1..621
DNA (621bp) protein (207aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_115_2
unknown

Not on your lists

766..1056
DNA (291bp) protein (97aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_115_3
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1384..2115)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YKB9_9BACT
restriction endonuclease
Tax=BJP_S1_SUB10_Methylophilales_55_32
scnpilot_solids2_trim150_scaffold_115_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2141..2344)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P6D8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33993.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
scnpilot_solids2_trim150_scaffold_115_5
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2409..3650)
DNA (1242bp) protein (414aa)
amine oxidase; K00274 monoamine oxidase [EC:1.4.3.4] rbh
Amine oxidase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V189_9BRAD rbh
Amine oxidase {ECO:0000313|EMBL:EFI53469.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
scnpilot_solids2_trim150_scaffold_115_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3865..5688)
DNA (1824bp) protein (608aa)
GTP-binding protein TypA/BipA n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJ65_AFIFE rbh
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:EKS30337.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
typA; GTP-binding protein typA/bipA; K06207 GTP-binding protein rbh
scnpilot_solids2_trim150_scaffold_115_7
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5858..7273)
DNA (1416bp) protein (472aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BG87_OLICM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI04949.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_115_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7437..7739
DNA (303bp) protein (101aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96); K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V186_9BRAD
scnpilot_solids2_trim150_scaffold_115_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8146..8523
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V185_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI53465.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_115_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8666..9313
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMK5_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30341.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_115_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9448..10659
DNA (1212bp) protein (404aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1
rlmN; ribosomal RNA large subunit methyltransferase N (EC:2.1.1.-); K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] rbh
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Afipia sp. 1NLS2 RepID=D6V183_9BRAD rbh
scnpilot_solids2_trim150_scaffold_115_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10851..11333
DNA (483bp) protein (161aa)
Putative lipoprotein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V182_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG10152.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_115_13
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11330..12112
DNA (783bp) protein (261aa)
Phosphoesterase PA-phosphatase related protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V181_9BRAD rbh
Phosphoesterase PA-phosphatase related protein {ECO:0000313|EMBL:EFI53461.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_115_14
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12109..13608
DNA (1500bp) protein (500aa)
Glycosyl transferase family 39 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V180_9BRAD rbh
Glycosyl transferase family 39 {ECO:0000313|EMBL:EFI53460.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
putative glycosyltransferase rbh
scnpilot_solids2_trim150_scaffold_115_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13782..15119
DNA (1338bp) protein (446aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009500}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00581}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
argG; argininosuccinate synthase (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5] rbh
Argininosuccinate synthase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V179_9BRAD rbh
scnpilot_solids2_trim150_scaffold_115_16
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15184..15969)
DNA (786bp) protein (262aa)
Methyltransferase type 11 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V178_9BRAD rbh
Methyltransferase type 11 {ECO:0000313|EMBL:EFI53458.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
methyltransferase type 11
scnpilot_solids2_trim150_scaffold_115_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16077..17273)
DNA (1197bp) protein (399aa)
OmpA/MotB domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V177_9BRAD rbh
Outer membrane porin F {ECO:0000313|EMBL:CEG10157.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
OmpA/MotB domain-containing protein rbh
scnpilot_solids2_trim150_scaffold_115_18
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18153..18392)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V175_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI53455.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_115_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18520..18897
DNA (378bp) protein (126aa)
Membrane protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V174_9BRAD
MAPEG family protein {ECO:0000313|EMBL:CEG10159.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
putative transmembrane protein
scnpilot_solids2_trim150_scaffold_115_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18907..19398)
DNA (492bp) protein (164aa)
Transcriptional regulator, MarR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V173_9BRAD
Organic hydroperoxide resistance transcriptional regulator {ECO:0000313|EMBL:CEG10160.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
transcriptional regulator, MarR family
scnpilot_solids2_trim150_scaffold_115_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19554..19988
DNA (435bp) protein (145aa)
Peroxiredoxin, Ohr subfamily n=1 Tax=Afipia sp. 1NLS2 RepID=D6V172_9BRAD
Peroxiredoxin, Ohr subfamily {ECO:0000313|EMBL:EFI53452.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
OsmC-like protein
scnpilot_solids2_trim150_scaffold_115_22
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20073..21125
DNA (1053bp) protein (351aa)
Alpha/beta hydrolase fold protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V171_9BRAD rbh
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EFI53451.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
epoxide hydrolase
scnpilot_solids2_trim150_scaffold_115_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21366..22148)
DNA (783bp) protein (261aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
sdhB; succinate dehydrogenase iron-sulfur subunit (EC:1.3.99.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1] rbh
Succinate dehydrogenase and fumarate reductase iron-sulfur protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V170_9BRAD rbh
scnpilot_solids2_trim150_scaffold_115_24
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22318..24138)
DNA (1821bp) protein (607aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
sdhA; succinate dehydrogenase flavoprotein subunit SdhA (EC:1.3.99.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] rbh
Succinate dehydrogenase, flavoprotein subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V169_9BRAD rbh
scnpilot_solids2_trim150_scaffold_115_25
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24142..24549)
DNA (408bp) protein (136aa)
Succinate dehydrogenase, hydrophobic membrane anchor protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V168_9BRAD
Succinate dehydrogenase, hydrophobic membrane anchor protein {ECO:0000313|EMBL:EFI53448.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
sdhD; succinate dehydrogenase, membrane anchor SdhD; K00242 succinate dehydrogenase membrane anchor subunit
scnpilot_solids2_trim150_scaffold_115_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24546..24941)
DNA (396bp) protein (132aa)
Succinate dehydrogenase, cytochrome b556 subunit n=1 Tax=Afipia felis ATCC 53690 RepID=K8NVZ0_AFIFE
Succinate dehydrogenase, cytochrome b556 subunit {ECO:0000313|EMBL:EKS30358.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
sdhC; succinate dehydrogenase, cytochrome b subunit SdhC; K00241 succinate dehydrogenase cytochrome b556 subunit
scnpilot_solids2_trim150_scaffold_115_27
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25235..25465
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V166_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI53446.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
scnpilot_solids2_trim150_scaffold_115_28
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25547..27076)
DNA (1530bp) protein (510aa)
AMP-dependent synthetase and ligase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V165_9BRAD rbh
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:CEG10209.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
malonyl-CoA synthase rbh
scnpilot_solids2_trim150_scaffold_115_29
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27167..28363)
DNA (1197bp) protein (399aa)
Major facilitator superfamily MFS_1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V162_9BRAD rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EFI53442.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
MFS transporter protein rbh
scnpilot_solids2_trim150_scaffold_115_30
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28489..29601
DNA (1113bp) protein (371aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] rbh
3-isopropylmalate dehydrogenase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V161_9BRAD rbh
Displaying items 1-30 of 99 in total

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