ggKbase home page

scnpilot_solids2_trim150_scaffold_4700

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_4700_1
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..327)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Frankia sp. EUN1f RepID=D3D479_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EFC82291.1}; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_4700_2
Actinoplanes sp. SE50/110, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(422..1570)
DNA (1149bp) protein (383aa)
nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; TaxID=134676 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8S1U1_ACTS5
scnpilot_solids2_trim150_scaffold_4700_3
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(1567..3237)
DNA (1671bp) protein (557aa)
putative threonine-phosphate decarboxylase (EC:4.1.1.81)
Putative threonine-phosphate decarboxylase {ECO:0000313|EMBL:BAN01477.1}; EC=4.1.1.81 {ECO:0000313|EMBL:BAN01477.1};; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
L-threonine-O-3-phosphate decarboxylase n=1 Tax=Serinicoccus profundi RepID=UPI000255E293 rbh
scnpilot_solids2_trim150_scaffold_4700_4
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3237..3770)
DNA (534bp) protein (178aa)
cobP; adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase (EC:2.7.1.156 2.7.7.62); K02231 adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase {ECO:0000313|EMBL:BAH49118.1}; EC=2.7.1.156 {ECO:0000313|EMBL:BAH49118.1};; EC=2.7.7.62 {ECO:0000313|EMBL:BAH49118.1};; TaxID=632772 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;"
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI000366C2C2
scnpilot_solids2_trim150_scaffold_4700_5
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3767..4585)
DNA (819bp) protein (273aa)
iron ABC transporter ATP-binding protein (EC:3.6.3.34); K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
Iron ABC transporter ATP-binding protein n=2 Tax=Saccharopolyspora erythraea RepID=A4FLK5_SACEN
ABC transporter {ECO:0000313|EMBL:KEI44489.1}; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
scnpilot_solids2_trim150_scaffold_4700_6
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(4585..5445)
DNA (861bp) protein (287aa)
ABC transporter permease n=1 Tax=Rhodococcus pyridinivorans AK37 RepID=H0JTG2_9NOCA rbh
ABC transporter permease rbh
Tax=RBG_16_Actinobacteria_70_17_curated
scnpilot_solids2_trim150_scaffold_4700_7
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5531..6520)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI00036C1563
Iron complex transporter substrate-binding protein {ECO:0000313|EMBL:EWM16670.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_4700_8
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6741..7742)
DNA (1002bp) protein (334aa)
cobalamin biosynthesis protein CobD; K02227 adenosylcobinamide-phosphate synthase [EC:6.3.1.10] rbh
cobalamin biosynthesis protein CobD n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B5C757 rbh
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
scnpilot_solids2_trim150_scaffold_4700_9
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7742..9019)
DNA (1278bp) protein (426aa)
fucose permease n=1 Tax=Ornithinimicrobium pekingense RepID=UPI0003B37BAA rbh
Major facilitator transporter {ECO:0000313|EMBL:EON24520.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
major facilitator superfamily protein
scnpilot_solids2_trim150_scaffold_4700_10
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9058..10035)
DNA (978bp) protein (326aa)
Aldo/keto reductase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X8V5_NAKMY
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ACV81053.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_4700_11
Mobiluncus curtisii, Mobiluncus, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10108..10860)
DNA (753bp) protein (251aa)
FCD domain protein n=1 Tax=Mobiluncus curtisii (strain ATCC 43063 / DSM 2711 / V125) RepID=D6ZHR9_MOBCV
GntR family transcriptional regulator
FCD domain protein {ECO:0000313|EMBL:ADI68177.1}; TaxID=548479 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Mobiluncus.;" source="Mobiluncus curtisii (strain ATCC 43063 / DSM 2711 / V125) (Falcivibrio; vaginalis).;"
scnpilot_solids2_trim150_scaffold_4700_12
Mobiluncus curtisii, Mobiluncus, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10969..11784
DNA (816bp) protein (272aa)
putative aminotransferase; K04127 isopenicillin-N epimerase [EC:5.1.1.17]
Aminotransferase, class V n=1 Tax=Mobiluncus curtisii subsp. holmesii ATCC 35242 RepID=E6M3L7_9ACTO
Aminotransferase, class V {ECO:0000313|EMBL:EFU82122.1}; TaxID=887899 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Mobiluncus.;" source="Mobiluncus curtisii subsp. holmesii ATCC 35242.;"
scnpilot_solids2_trim150_scaffold_4700_13
Mobiluncus curtisii, Mobiluncus, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11736..12026
DNA (291bp) protein (97aa)
cefD; putative isopenicillin-N epimerase (EC:5.1.1.17); K04127 isopenicillin-N epimerase [EC:5.1.1.17]
Aminotransferase, class V n=1 Tax=Mobiluncus curtisii (strain ATCC 43063 / DSM 2711 / V125) RepID=D6ZHR8_MOBCV
Aminotransferase, class V {ECO:0000313|EMBL:EFU82122.1}; TaxID=887899 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Mobiluncus.;" source="Mobiluncus curtisii subsp. holmesii ATCC 35242.;"
scnpilot_solids2_trim150_scaffold_4700_14
Mobiluncus curtisii, Mobiluncus, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12140..13372
DNA (1233bp) protein (411aa)
ABC transporter, solute-binding protein n=2 Tax=Mobiluncus curtisii RepID=D6ZHR7_MOBCV rbh
sugar ABC transporter ATP-binding protein; K02027 multiple sugar transport system substrate-binding protein rbh
ABC transporter, solute-binding protein {ECO:0000313|EMBL:ADI68175.1}; TaxID=548479 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Mobiluncus.;" source="Mobiluncus curtisii (strain ATCC 43063 / DSM 2711 / V125) (Falcivibrio; vaginalis).;"
scnpilot_solids2_trim150_scaffold_4700_15
Mobiluncus curtisii, Mobiluncus, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13383..14375
DNA (993bp) protein (331aa)
ABC transporter, permease protein n=1 Tax=Mobiluncus curtisii subsp. holmesii ATCC 35242 RepID=E6M3L9_9ACTO rbh
ABC transporter, permease protein {ECO:0000313|EMBL:EFU82124.1}; TaxID=887899 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Mobiluncus.;" source="Mobiluncus curtisii subsp. holmesii ATCC 35242.;"
sugar ABC transporter membrane protein; K02025 multiple sugar transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_4700_16
Mobiluncus curtisii, Mobiluncus, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14372..15034
DNA (663bp) protein (221aa)
ABC transporter, permease protein n=2 Tax=Mobiluncus curtisii RepID=D6ZHR5_MOBCV
sugar ABC transporter membrane protein; K02026 multiple sugar transport system permease protein
ABC transporter, permease protein {ECO:0000313|EMBL:EFU82125.1}; TaxID=887899 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Mobiluncus.;" source="Mobiluncus curtisii subsp. holmesii ATCC 35242.;"
scnpilot_solids2_trim150_scaffold_4700_17
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15031..15747
DNA (717bp) protein (239aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
peptide methionine sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
methionine sulfoxide reductase A n=1 Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI00036A9482
scnpilot_solids2_trim150_scaffold_4700_18
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15754..16308)
DNA (555bp) protein (185aa)
arsenic transporter n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B4BCCE
membrane efflux protein
Arsenical pump membrane protein {ECO:0000256|RuleBase:RU004993}; TaxID=1214101 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
scnpilot_solids2_trim150_scaffold_4700_19
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16358..16972)
DNA (615bp) protein (205aa)
Arsenical pump membrane protein n=1 Tax=Actinoplanes sp. N902-109 RepID=R4LX08_9ACTO
arsB; arsenical pump membrane protein
Arsenical pump membrane protein {ECO:0000256|RuleBase:RU004993}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
scnpilot_solids2_trim150_scaffold_4700_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18727..19023
DNA (297bp) protein (99aa)
Uncharacterized protein id=3352312 bin=GWA2_Methylomirabilis_73_35 species=ACD24 genus=ACD24 taxon_order=ACD24 taxon_class=ACD24 phylum=WWE3 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
scnpilot_solids2_trim150_scaffold_4700_21
unknown

Not on your lists

19084..19344
DNA (261bp) protein (87aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_4700_22
Mycobacterium abscessus, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19675..20118
DNA (444bp) protein (148aa)
Alpha-crystallin n=15 Tax=Mycobacterium abscessus RepID=I6ZHB1_MYCAB
hspX; alpha-crystallin
Heat shock protein Hsp20 {ECO:0000313|EMBL:AGM31040.1}; TaxID=1303024 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium abscessus.;" source="Mycobacterium abscessus subsp. bolletii 50594.;"
scnpilot_solids2_trim150_scaffold_4700_23
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20304..20762)
DNA (459bp) protein (153aa)
Amino acid decarboxylase, pyridoxal-dependent protein n=3 Tax=Amycolatopsis mediterranei RepID=G0FZ26_AMYMS
amino acid decarboxylase, pyridoxal-dependent protein
Amino acid decarboxylase, pyridoxal-dependent protein {ECO:0000313|EMBL:AEK46197.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
Displaying 23 items

View Taxonomy