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scnpilot_solids2_trim150_scaffold_239

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_239_1
unknown

Not on your lists

comp(1..78)
DNA (78bp) protein (26aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_239_2
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(78..386)
DNA (309bp) protein (103aa)
transcriptional regulator n=1 Tax=Frankia sp. BMG5.12 RepID=UPI0003676458
Excisionase {ECO:0000313|EMBL:KDN23933.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
scnpilot_solids2_trim150_scaffold_239_trna_5
unknown

Not on your lists

comp(543..616)
DNA (74bp)
transferRNA Phe
scnpilot_solids2_trim150_scaffold_239_trna_4
unknown

Not on your lists

comp(665..738)
DNA (74bp)
transferRNA Asp
scnpilot_solids2_trim150_scaffold_239_trna_3
unknown

Not on your lists

comp(785..857)
DNA (73bp)
transferRNA Glu
scnpilot_solids2_trim150_scaffold_239_3
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1022..2911)
DNA (1890bp) protein (630aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X9A9_NAKMY rbh
EmrB/QacA subfamily drug resistance transporter rbh
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:ACV77177.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_239_4
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2908..3429)
DNA (522bp) protein (174aa)
Transcriptional regulator, MarR family n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X9A8_NAKMY
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ACV77176.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_239_trna_1
unknown

Not on your lists

3619..3691
DNA (73bp)
transferRNA Lys
scnpilot_solids2_trim150_scaffold_239_5
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3811..4956)
DNA (1146bp) protein (382aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] rbh
Riboflavin biosynthesis protein RibD n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X999_NAKMY rbh
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_239_6
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5080..5916)
DNA (837bp) protein (279aa)
Extradiol ring-cleavage dioxygenase class III protein subunit B n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X998_NAKMY rbh
extradiol ring-cleavage dioxygenase class III protein subunit B rbh
Extradiol ring-cleavage dioxygenase class III protein subunit B {ECO:0000313|EMBL:ACV77166.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_239_7
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5994..6497
DNA (504bp) protein (168aa)
Transcriptional regulator, MarR family n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X997_NAKMY
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ACV77165.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_239_8
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6573..7619
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Rhodococcus ruber BKS 20-38 RepID=M2ZX60_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:AIY18111.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_239_9
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7627..8538)
DNA (912bp) protein (304aa)
asparaginase; K13051 beta-aspartyl-peptidase (threonine type) [EC:3.4.19.5] rbh
Asparaginase n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BF38_SANKS rbh
Asparaginase {ECO:0000313|EMBL:ACZ21334.1}; TaxID=446469 species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
scnpilot_solids2_trim150_scaffold_239_10
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8594..9439)
DNA (846bp) protein (282aa)
Peptidase M55 D-aminopeptidase n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4F1B1_MODMB rbh
peptidase M55 D-aminopeptidase rbh
Peptidase M55 D-aminopeptidase {ECO:0000313|EMBL:CCH89424.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
scnpilot_solids2_trim150_scaffold_239_11
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9436..10482)
DNA (1047bp) protein (349aa)
oppF; oligopeptide transport protein (ABC superfamily, ATP-binding protein) (EC:3.6.3.27) rbh
Oligopeptide transport protein (ABC superfamily, ATP-binding protein) {ECO:0000313|EMBL:CCH89425.1}; EC=3.6.3.27 {ECO:0000313|EMBL:CCH89425.1};; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
peptide ABC transporter ATPase n=1 Tax=Glaciibacter superstes RepID=UPI0003B64328 rbh
scnpilot_solids2_trim150_scaffold_239_12
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10479..11492)
DNA (1014bp) protein (338aa)
ABC transporter ATP-binding protein, putative oligo/dipeptide transport protein n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4F1B3_MODMB rbh
ABC transporter ATP-binding protein, putative oligo/dipeptide transport protein rbh
ABC transporter ATP-binding protein, putative oligo/dipeptide transport protein {ECO:0000313|EMBL:CCH89426.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
scnpilot_solids2_trim150_scaffold_239_13
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11489..12379)
DNA (891bp) protein (297aa)
Oligopeptide transport system permease protein appC n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4F1B4_MODMB rbh
appC; oligopeptide transport system permease AppC rbh
Oligopeptide transport system permease protein appC {ECO:0000313|EMBL:CCH89427.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
scnpilot_solids2_trim150_scaffold_239_14
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12387..13328)
DNA (942bp) protein (314aa)
Permease of peptide ABC transporter n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4F1B5_MODMB rbh
permease of peptide ABC transporter rbh
Permease of peptide ABC transporter {ECO:0000313|EMBL:CCH89428.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
scnpilot_solids2_trim150_scaffold_239_15
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13376..15019)
DNA (1644bp) protein (548aa)
ABC-type dipeptide transport system, extracellular component n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4F1B6_MODMB rbh
appA; ABC-type dipeptide transport system, extracellular component rbh
ABC-type dipeptide transport system, extracellular component {ECO:0000313|EMBL:CCH89429.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
scnpilot_solids2_trim150_scaffold_239_16
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15264..16157
DNA (894bp) protein (298aa)
Transcriptional regulator, RpiR family n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4F1A9_MODMB
RpiR family transcriptional regulator
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:CCH89422.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
scnpilot_solids2_trim150_scaffold_239_17
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16537..17727
DNA (1191bp) protein (397aa)
Allergen V5/Tpx-1 family protein n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LU71_ACIC1
Allergen V5/Tpx-1 family protein
Allergen V5/Tpx-1 family protein {ECO:0000313|EMBL:ABK52981.1}; Flags: Precursor;; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
scnpilot_solids2_trim150_scaffold_239_18
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17852..18928)
DNA (1077bp) protein (359aa)
Mechanosensitive ion channel family protein n=1 Tax=Ralstonia sp. PBA RepID=I9W642_9RALS
Mechanosensitive ion channel family protein {ECO:0000313|EMBL:EIZ03914.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
MscS mechanosensitive ion channel
scnpilot_solids2_trim150_scaffold_239_19
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19048..19440
DNA (393bp) protein (131aa)
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Ruania albidiflava RepID=UPI0003B2EB3D
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein {ECO:0000313|EMBL:EFC85528.1}; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_239_20
bacterium YEK0313, Bacteria

Not on your lists

comp(19498..20757)
DNA (1260bp) protein (420aa)
UPI0003D03B01 related cluster n=1 Tax=unknown RepID=UPI0003D03B01 rbh
N-isopropylammelide isopropyl amidohydrolase {ECO:0000313|EMBL:CEJ12238.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
amidohydrolase
scnpilot_solids2_trim150_scaffold_239_21
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20789..21865)
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Micromonospora sp. CNB394 RepID=UPI0003623EC9 rbh
Renal dipeptidase {ECO:0000313|EMBL:EWM64776.1}; TaxID=457406 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
membrane dipeptidase
scnpilot_solids2_trim150_scaffold_239_22
Rhodococcus sp. AD45, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21862..22404)
DNA (543bp) protein (181aa)
Guanine deaminase {ECO:0000313|EMBL:KJF22583.1}; EC=3.5.4.3 {ECO:0000313|EMBL:KJF22583.1};; TaxID=103808 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AD45.;"
guaD; guanine deaminase (EC:3.5.4.3)
Cytidine/deoxycytidylate deaminase n=1 Tax=Salimicrobium sp. MJ3 RepID=K2GLH2_9BACI
scnpilot_solids2_trim150_scaffold_239_23
Serratia liquefaciens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22434..23516)
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Spirochaeta alkalica RepID=UPI000371F807
peptide ABC transporter substrate-binding protein
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:AGQ31664.1}; TaxID=1346614 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia liquefaciens ATCC 27592.;"
scnpilot_solids2_trim150_scaffold_239_24
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23518..24516)
DNA (999bp) protein (333aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q865_CATAD
peptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ACU74232.1}; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
scnpilot_solids2_trim150_scaffold_239_25
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24531..25394)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZLC5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCQ96962.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
oligopeptide transport permease APPC; K02034 peptide/nickel transport system permease protein
scnpilot_solids2_trim150_scaffold_239_26
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25391..26377)
DNA (987bp) protein (329aa)
Putative dipeptide transport system permease protein 1 n=1 Tax=Clostridium ultunense Esp RepID=M1ZFM4_9CLOT
Putative dipeptide transport system permease protein 1 {ECO:0000313|EMBL:CCQ96963.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
ABC transporter permease; K02033 peptide/nickel transport system permease protein
Displaying items 1-30 of 63 in total

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