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scnpilot_solids2_trim150_scaffold_487

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_487_1
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..678
DNA (678bp) protein (226aa)
TonB-dependent receptor n=2 Tax=Sphingobium chlorophenolicum RepID=F6F3N5_SPHCR
TonB-dependent receptor
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
scnpilot_solids2_trim150_scaffold_487_2
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

675..863
DNA (189bp) protein (63aa)
TonB-dependent receptor n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NC46_ERYLH
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ABC62745.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_solids2_trim150_scaffold_487_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(952..2196)
DNA (1245bp) protein (415aa)
Luciferase family protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPK0_PARL1 rbh
luciferase family protein rbh
Luciferase family protein {ECO:0000313|EMBL:ABS61833.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_487_4
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2364..3782
DNA (1419bp) protein (473aa)
Major facilitator superfamily MFS_1 n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T6N4_CAUSK rbh
major facilitator transporter rbh
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
scnpilot_solids2_trim150_scaffold_487_5
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3859..4521
DNA (663bp) protein (221aa)
PKHD-type hydroxylase G432_04900 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
PKHD-type hydroxylase G432_04900 n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SDI2_9SPHN
putative hydroxylase
scnpilot_solids2_trim150_scaffold_487_6
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(4518..5540)
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039CB4D6
Uncharacterized protein {ECO:0000313|EMBL:KIF22802.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_487_7
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5537..6145)
DNA (609bp) protein (203aa)
Transcriptional regulator, TetR family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RG43_PHEZH
transcriptional regulator, TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACG77167.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
scnpilot_solids2_trim150_scaffold_487_8
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6247..7665
DNA (1419bp) protein (473aa)
Retinal pigment epithelial membrane protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RG44_PHEZH rbh
retinal pigment epithelial membrane protein; K11159 carotenoid cleavage dioxygenase rbh
Retinal pigment epithelial membrane protein {ECO:0000313|EMBL:ACG77168.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
scnpilot_solids2_trim150_scaffold_487_9
Pseudanabaena biceps, Pseudanabaena, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

7754..9103
DNA (1350bp) protein (450aa)
Metallophosphoesterase n=1 Tax=Pseudanabaena biceps PCC 7429 RepID=L8MTS8_9CYAN rbh
Metallophosphoesterase {ECO:0000313|EMBL:ELS30836.1}; Flags: Precursor;; TaxID=927668 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Pseudanabaena.;" source="Pseudanabaena biceps PCC 7429.;"
metallophosphoesterase
scnpilot_solids2_trim150_scaffold_487_10
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9248..14113
DNA (4866bp) protein (1622aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036659F9 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDL00754.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
hypothetical protein; K06894 rbh
scnpilot_solids2_trim150_scaffold_487_11
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14124..16229
DNA (2106bp) protein (702aa)
Penicillin-binding protein 1C (PBP-1C) Penicillin-insensitive transglycosylase (Peptidoglycan TGase)(N-terminal) Transpeptidase-like module (C-terminal) {ECO:0000313|EMBL:CDL00755.1}; EC=2.4.2.- {ECO:0000313|EMBL:CDL00755.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
penicillin-binding protein 1C (EC:2.4.1.129); K05367 penicillin-binding protein 1C [EC:2.4.1.-]
Penicillin-binding protein 1C (PBP-1C) Penicillin-insensitive transglycosylase (Peptidoglycan TGase)(N-terminal) Transpeptidase-like module (C-terminal) n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F5G6_9PROT rbh
scnpilot_solids2_trim150_scaffold_487_12
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16500..17822
DNA (1323bp) protein (441aa)
Major facilitator superfamily transporter n=1 Tax=Oceanibaculum indicum P24 RepID=K2JLX4_9PROT rbh
Multidrug-efflux transporter {ECO:0000313|EMBL:CDO58971.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
major facilitator superfamily transporter rbh
scnpilot_solids2_trim150_scaffold_487_13
Pseudomonas sp. FeS53a, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17823..19130)
DNA (1308bp) protein (436aa)
Membrane-bound lytic murein transglycosylase B {ECO:0000313|EMBL:KIV65574.1}; EC=3.2.1.- {ECO:0000313|EMBL:KIV65574.1};; TaxID=1604022 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FeS53a.;"
Putative murein transglycosylase n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HX93_PSEUO rbh
murein transglycosylase rbh
scnpilot_solids2_trim150_scaffold_487_14
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19361..19486
DNA (126bp) protein (42aa)
50S ribosomal protein L36 n=1 Tax=Asaia sp. SF2.1 RepID=V8A9Y9_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
scnpilot_solids2_trim150_scaffold_487_15
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19563..20150
DNA (588bp) protein (196aa)
TPR repeat-containing protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUQ9_PARL1
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ABS63642.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_487_16
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20184..21608)
DNA (1425bp) protein (475aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
pyruvate kinase; K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUR1_PARL1
scnpilot_solids2_trim150_scaffold_487_17
Pseudovibrio sp. FO-BEG1, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21611..21973)
DNA (363bp) protein (121aa)
Putative uncharacterized protein n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R727_9RHOB
hypothetical protein
Protein containing DUF1036 {ECO:0000313|EMBL:AEV39268.1}; TaxID=911045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. (strain FO-BEG1).;"
scnpilot_solids2_trim150_scaffold_487_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22108..23199
DNA (1092bp) protein (364aa)
N-formylglutamate amidohydrolase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUR3_PARL1
N-formylglutamate amidohydrolase
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:ABS63646.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_487_19
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23284..23526
DNA (243bp) protein (81aa)
UPF0335 protein Plav_2034 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=Y2034_PARL1
hypothetical protein
UPF0335 protein Plav_2034 {ECO:0000255|HAMAP-Rule:MF_00797}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_487_20
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23554..25080)
DNA (1527bp) protein (509aa)
Sigma-54 factor interaction domain-containing protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IX08_POLGS
Response regulatory protein {ECO:0000313|EMBL:CDO58957.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Sigma-54 factor interaction domain-containing protein
scnpilot_solids2_trim150_scaffold_487_21
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25192..26235
DNA (1044bp) protein (348aa)
UPI0003CFE023 related cluster n=1 Tax=unknown RepID=UPI0003CFE023
Uncharacterized protein {ECO:0000313|EMBL:ESZ14980.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_487_22
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26249..26698
DNA (450bp) protein (150aa)
Thioesterase superfamily protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUT5_PARL1
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ABS63668.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_487_23
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26700..27755
DNA (1056bp) protein (352aa)
Alpha/beta hydrolase fold n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUT6_PARL1 rbh
alpha/beta hydrolase fold protein rbh
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABS63669.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_487_24
unknown

Not on your lists

27843..27989
DNA (147bp) protein (49aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_487_25
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28014..29144
DNA (1131bp) protein (377aa)
NAD(P) transhydrogenase alpha subunit {ECO:0000313|EMBL:CDO58950.1}; EC=1.6.1.2 {ECO:0000313|EMBL:CDO58950.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
pntAA; NAD(P) transhydrogenase subunit alpha part 1 (EC:1.6.1.2); K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2] rbh
NAD(P) transhydrogenase subunit alpha n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITS8_RHOCS rbh
scnpilot_solids2_trim150_scaffold_487_26
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29148..29453
DNA (306bp) protein (102aa)
NAD(P) transhydrogenase alpha subunit {ECO:0000313|EMBL:CDP52891.1}; EC=1.6.1.2 {ECO:0000313|EMBL:CDP52891.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
NAD(P) transhydrogenase subunit alpha; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
NAD(P) transhydrogenase subunit alpha part n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUU0_PARL1
scnpilot_solids2_trim150_scaffold_487_27
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29461..30858
DNA (1398bp) protein (466aa)
NAD(P)(+) transhydrogenase (EC:1.6.1.2)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A591_STAND
scnpilot_solids2_trim150_scaffold_487_28
Brevundimonas sp. KM4, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30842..31744)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI0003700591
LysR family transcriptional regulator {ECO:0000313|EMBL:KJV41999.1}; TaxID=1628191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. KM4.;"
LysR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_487_29
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31868..33367
DNA (1500bp) protein (500aa)
methylmalonate-semialdehyde dehydrogenase; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] rbh
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HT33_PARL1 rbh
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:ABS63066.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_487_30
unknown

Not on your lists

33663..34109
DNA (447bp) protein (149aa)

This feature has no annotations

Displaying items 1-30 of 36 in total

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