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scnpilot_solids2_trim150_scaffold_1479

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1479_1
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

113..544
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7D5_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB75336.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids2_trim150_scaffold_1479_2
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1003..1521)
DNA (519bp) protein (173aa)
Lytic transglycosylase, catalytic n=1 Tax=Ralstonia solanacearum SD54 RepID=V5CHJ8_RALSL
Lytic transglycosylase, catalytic {ECO:0000313|EMBL:EPL59896.1}; TaxID=1212549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri B1SMN1.;"
lytic transglycosylase, catalytic; K03194 type IV secretion system protein VirB1
scnpilot_solids2_trim150_scaffold_1479_3
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1518..2030)
DNA (513bp) protein (171aa)
Putative DNA processing protein TraF n=1 Tax=uncultured bacterium PF3_9BACT">RepID=U3LPF3_9BACT
Conjugal transfer protein TraF {ECO:0000313|EMBL:KGK65892.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
Type IV secretory pathway protease TraF-like
scnpilot_solids2_trim150_scaffold_1479_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2027..3898)
DNA (1872bp) protein (624aa)
Conjugal transfer coupling protein TraG n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae KPNIH18 RepID=J2TAF9_KLEPN rbh
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KIO48703.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4 rbh
scnpilot_solids2_trim150_scaffold_1479_5
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3895..5532)
DNA (1638bp) protein (546aa)
Relaxase/mobilization nuclease family protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0ACY9_NITEC rbh
relaxase/mobilization nuclease family protein rbh
Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:ABI60782.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
scnpilot_solids2_trim150_scaffold_1479_6
unknown

Not on your lists

comp(5611..5784)
DNA (174bp) protein (58aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1479_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5882..6166)
DNA (285bp) protein (95aa)
TraJ protein n=2 Tax=Escherichia coli RepID=I2YBJ5_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KIO48702.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
TraJ protein
scnpilot_solids2_trim150_scaffold_1479_8
unknown

Not on your lists

comp(6163..6312)
DNA (150bp) protein (50aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1479_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6693..7088
DNA (396bp) protein (132aa)
Uncharacterized protein n=6 Tax=Pseudomonas syringae pv. actinidiae RepID=F3I3N1_PSESF
Uncharacterized protein {ECO:0000313|EMBL:KIO48701.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
scnpilot_solids2_trim150_scaffold_1479_10

Not on your lists

7048..7863
DNA (816bp) protein (272aa)
Putative uncharacterized protein n=2 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SDS2_CITFR rbh
Putative transfer origin protein TraL {ECO:0000313|EMBL:AGH89382.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
traL; conjugal transfer pilus assembly protein TraL
scnpilot_solids2_trim150_scaffold_1479_11
unknown

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7878..8108
DNA (231bp) protein (77aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1479_12
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8209..8811
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Pseudomonas mendocina RepID=UPI00035FFFA7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI06180.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
scnpilot_solids2_trim150_scaffold_1479_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9243..9482
DNA (240bp) protein (80aa)
Putative mating pair formation protein n=1 Tax=Stenotrophomonas maltophilia RepID=Q7WZM4_STEMA
Putative mating pair formation protein {ECO:0000313|EMBL:AAP82048.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
helix-turn-helix domain-containing protein
scnpilot_solids2_trim150_scaffold_1479_14
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9591..10559
DNA (969bp) protein (323aa)
Type II secretion system protein E n=1 Tax=Pseudomonas stutzeri B1SMN1 RepID=S6L2J8_PSEST rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:CDH01443.1}; TaxID=1398200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii str. feltiae Moldova.;"
type II secretion system protein E; K03196 type IV secretion system protein VirB11 rbh
scnpilot_solids2_trim150_scaffold_1479_15
unknown

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10577..10669
DNA (93bp) protein (31aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1479_16
Bartonella rochalimae, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10777..11127
DNA (351bp) protein (117aa)
Conjugal transfer protein TrbC n=1 Tax=Bartonella rochalimae ATCC BAA-1498 RepID=E6YKF0_9RHIZ
Conjugal transfer protein TrbC {ECO:0000313|EMBL:CBI77338.1}; Uncharacterized protein {ECO:0000313|EMBL:KEC55600.1}; TaxID=685782 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella rochalimae ATCC BAA-1498.;"
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
scnpilot_solids2_trim150_scaffold_1479_17
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11429..13894
DNA (2466bp) protein (822aa)
CagE, TrbE, VirB component of type IV transporter system n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae KPNIH18 RepID=J1ZX06_KLEPN rbh
Transporter {ECO:0000313|EMBL:KIO48647.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
CagE, TrbE, VirB component of type IV transporter system; K03199 type IV secretion system protein VirB4 rbh
scnpilot_solids2_trim150_scaffold_1479_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13875..14621
DNA (747bp) protein (249aa)
P-type conjugative transfer protein TrbJ n=3 Tax=Escherichia coli RepID=I2YAD0_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KIO48646.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
trbJ; P-type conjugative transfer protein TrbJ
scnpilot_solids2_trim150_scaffold_1479_19
unknown

Not on your lists

14622..14840
DNA (219bp) protein (73aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1479_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14840..16153
DNA (1314bp) protein (438aa)
TrbL protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AD18_NITEC
Uncharacterized protein {ECO:0000313|EMBL:KIO48644.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K07344 type IV secretion system protein TrbL
scnpilot_solids2_trim150_scaffold_1479_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16131..16808
DNA (678bp) protein (226aa)
conjugal transfer protein n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002376FBC
Conjugal transfer protein {ECO:0000313|EMBL:KIO48643.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
conjugal transfer protein; K03200 type IV secretion system protein VirB5
scnpilot_solids2_trim150_scaffold_1479_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16805..17713
DNA (909bp) protein (303aa)
Putative mating pair formation protein n=2 Tax=Ralstonia solanacearum RepID=V5AS01_RALSL rbh
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KIO48705.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
scnpilot_solids2_trim150_scaffold_1479_23
unknown

Not on your lists

17737..18159
DNA (423bp) protein (141aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1479_24
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18156..19310
DNA (1155bp) protein (385aa)
conjugal transfer protein TrbI n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002376FB9 rbh
Conjugation TrbI family protein {ECO:0000313|EMBL:CDH02258.1}; TaxID=1398200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii str. feltiae Moldova.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10 rbh
scnpilot_solids2_trim150_scaffold_1479_25
unknown

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comp(20191..20292)
DNA (102bp) protein (34aa)

This feature has no annotations

Displaying 25 items

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