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scnpilot_solids2_trim150_scaffold_3125

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_3125_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..2137
DNA (2136bp) protein (712aa)
Peptidase S46 n=1 Tax=Rhodanobacter denitrificans RepID=M4ND84_9GAMM
Peptidase S46
Peptidase S46 {ECO:0000313|EMBL:AGG88700.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3125_2
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2338..2550)
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000371AD74
PF11903 family protein {ECO:0000313|EMBL:KCB41659.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_3125_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2753..3721
DNA (969bp) protein (323aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobact
tRNA dimethylallyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NLT5_9GAMM rbh
tRNA isopentenyltransferase MiaA rbh
scnpilot_solids2_trim150_scaffold_3125_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3854..4138
DNA (285bp) protein (95aa)
RNA-binding protein Hfq n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW35_9GAMM
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RNA-binding protein Hfq
scnpilot_solids2_trim150_scaffold_3125_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4196..5497
DNA (1302bp) protein (434aa)
GTPase HflX n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW34_9GAMM
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
GTP-binding protein HflX
scnpilot_solids2_trim150_scaffold_3125_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5665..6735
DNA (1071bp) protein (357aa)
Integral membrane protease subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW33_9GAMM
Integral membrane protease subunit {ECO:0000313|EMBL:EIL91424.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
HflK protein
scnpilot_solids2_trim150_scaffold_3125_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6732..7601
DNA (870bp) protein (290aa)
Protein HflC n=1 Tax=Rhodanobacter denitrificans RepID=M4ND89_9GAMM
membrane protease subunit, stomatin/prohibitin
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3125_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7680..8969
DNA (1290bp) protein (430aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPC0_9GAMM
scnpilot_solids2_trim150_scaffold_3125_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8970..9458)
DNA (489bp) protein (163aa)
SsrA-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6T8_9GAMM
SsrA-binding protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_3125_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9600..10031
DNA (432bp) protein (144aa)
Oligoketide cyclase/lipid transport protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI76_9GAMM
Oligoketide cyclase/lipid transport protein {ECO:0000313|EMBL:EIL99167.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
oligoketide cyclase/lipid transport protein
scnpilot_solids2_trim150_scaffold_3125_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10024..10305
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH4_9GAMM
hypothetical protein
UPF0125 protein R2APBS1_1831 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3125_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10330..10788)
DNA (459bp) protein (153aa)
Small protein A (TmRNA-binding) n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH5_9GAMM
small protein A (tmRNA-binding)
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3125_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10864..11424
DNA (561bp) protein (187aa)
Fe2+/Zn2+ uptake regulation protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI79_9GAMM
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:EIL99170.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Fe2+/Zn2+ uptake regulation protein
scnpilot_solids2_trim150_scaffold_3125_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11459..13072)
DNA (1614bp) protein (538aa)
Signal transduction histidine kinase, glucose-6-phosphate specific n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH7_9GAMM
signal transduction histidine kinase, glucose-6-phosphate specific
Signal transduction histidine kinase, glucose-6-phosphate specific {ECO:0000313|EMBL:AGG88955.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3125_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13154..13789
DNA (636bp) protein (212aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6U4_9GAMM
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EIL95185.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
scnpilot_solids2_trim150_scaffold_3125_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13802..15475)
DNA (1674bp) protein (558aa)
DNA repair protein RecN n=1 Tax=Rhodanobacter denitrificans RepID=M4NH33_9GAMM
DNA replication and repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3125_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15598..16659
DNA (1062bp) protein (354aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI0_9GAMM
heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3125_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16741..17274
DNA (534bp) protein (178aa)
Protein GrpE n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI84_9GAMM
molecular chaperone GrpE (heat shock protein)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_3125_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17373..18767
DNA (1395bp) protein (465aa)
Chaperone protein DnaK n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI86_9GAMM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
chaperone protein DnaK
Displaying 19 items

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