ggKbase home page

scnpilot_solids2_trim150_scaffold_3327

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_3327_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..547
DNA (546bp) protein (182aa)
Xylan 1,4-beta-xylosidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0A9_9GAMM
Xylan 1,4-beta-xylosidase {ECO:0000313|EMBL:EIL92900.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
beta-xylosidase
scnpilot_solids2_trim150_scaffold_3327_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(585..2177)
DNA (1593bp) protein (531aa)
Tryptophan halogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0A8_9GAMM
Tryptophan halogenase {ECO:0000313|EMBL:EIL92899.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
tryptophan halogenase
scnpilot_solids2_trim150_scaffold_3327_3
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2319..4739
DNA (2421bp) protein (807aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034A995B rbh
TonB-dependent receptor {ECO:0000313|EMBL:AIF46622.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
TonB-dependent receptor-like protein
scnpilot_solids2_trim150_scaffold_3327_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5385..7943)
DNA (2559bp) protein (853aa)
glycosidase; K01188 beta-glucosidase [EC:3.2.1.21] rbh
Glucan 1,4-beta-glucosidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0A6_9GAMM
Glucan 1,4-beta-glucosidase {ECO:0000313|EMBL:EIL92897.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_3327_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8058..8999)
DNA (942bp) protein (314aa)
LacI family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0A5_9GAMM
LacI family transcriptional regulator {ECO:0000313|EMBL:EIL92896.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
scnpilot_solids2_trim150_scaffold_3327_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9304..11373
DNA (2070bp) protein (690aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRR2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02154.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_3327_7
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11370..11486
DNA (117bp) protein (39aa)
MFS transporter permease n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ61_9GAMM
MFS transporter {ECO:0000313|EMBL:AHX15651.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
major facilitator superfamily protein
scnpilot_solids2_trim150_scaffold_3327_8
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11489..12796
DNA (1308bp) protein (436aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0A3_9GAMM
Major Facilitator Superfamily transporter
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids2_trim150_scaffold_3327_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12890..13981)
DNA (1092bp) protein (364aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.2.- 3.5.4.25) rbh
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ98_9GAMM rbh
scnpilot_solids2_trim150_scaffold_3327_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14114..14755)
DNA (642bp) protein (214aa)
riboflavin synthase alpha chain (EC:2.5.1.9)
Riboflavin synthase subunit alpha n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSH9_9GAMM
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:EIL90170.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_3327_11
Pseudomonas sp. M47T1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15168..16358
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. M47T1 RepID=I4N9Z7_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:EIK98287.1}; TaxID=1179778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. M47T1.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_3327_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16405..17469)
DNA (1065bp) protein (355aa)
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:3.5.4.26 1.1.1.193) rbh
Riboflavin biosynthesis protein RibD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJA0_9GAMM
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_3327_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17620..18129)
DNA (510bp) protein (170aa)
Transcriptional repressor NrdR n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJA1_9GAMM rbh
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcriptional regulator NrdR rbh
scnpilot_solids2_trim150_scaffold_3327_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18223..18519)
DNA (297bp) protein (99aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glycine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1]
Serine hydroxymethyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJA2_9GAMM
Displaying 14 items

View Taxonomy