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scnpilot_solids2_trim150_scaffold_3418

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_3418_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..654)
DNA (654bp) protein (218aa)
Sodium/hydrogen exchanger family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR72_9GAMM
Kef-type K+ transport system, predicted NAD-binding component
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_3418_trna_1
unknown

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1393..1464
DNA (72bp)
transferRNA Pseudo
scnpilot_solids2_trim150_scaffold_3418_trna_2
unknown

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1480..1553
DNA (74bp)
transferRNA Asp
scnpilot_solids2_trim150_scaffold_3418_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1668..2159)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR71_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89357.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3418_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2181..2996)
DNA (816bp) protein (272aa)
Putative phosphoenolpyruvate synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00213394}; Short=PEP synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062};; Short=PSRP {ECO:0000256|HAMAP-Rule:MF_01062};; EC=2.7.11.33 {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00160002};; EC=2.7.4.28 {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00159999};; Pyruvate, water dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062}; TaxID=1163407 species="Bacteri
Putative phosphoenolpyruvate synthase regulatory protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6P2_9GAMM
hypothetical protein
scnpilot_solids2_trim150_scaffold_3418_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3221..5593
DNA (2373bp) protein (791aa)
Phosphoenolpyruvate synthase {ECO:0000256|PIRNR:PIRNR000854}; Short=PEP synthase {ECO:0000256|PIRNR:PIRNR000854};; EC=2.7.9.2 {ECO:0000256|PIRNR:PIRNR000854};; Pyruvate, water dikinase {ECO:0000256|PIRNR:PIRNR000854}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phosphoenolpyruvate synthase (EC:2.7.9.2) rbh
Phosphoenolpyruvate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6P1_9GAMM
scnpilot_solids2_trim150_scaffold_3418_trna_4
unknown

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comp(5853..5940)
DNA (88bp)
transferRNA Ser
scnpilot_solids2_trim150_scaffold_3418_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5977..6573
DNA (597bp) protein (199aa)
Protein phosphatase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPK1_9GAMM
serine/threonine protein phosphatase
Protein phosphatase {ECO:0000313|EMBL:EIM01393.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_3418_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6592..7296)
DNA (705bp) protein (235aa)
DNA polymerase III, epsilon subunit (EC:2.7.7.7)
DNA polymerase III, epsilon subunit {ECO:0000313|EMBL:AGG89361.1}; EC=2.7.7.7 {ECO:0000313|EMBL:AGG89361.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
DNA polymerase III subunit epsilon n=1 Tax=Rhodanobacter denitrificans RepID=I4WR67_9GAMM
scnpilot_solids2_trim150_scaffold_3418_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7293..7736)
DNA (444bp) protein (148aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Ribonuclease H n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPJ9_9GAMM
ribonuclease HI
scnpilot_solids2_trim150_scaffold_3418_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7743..8444)
DNA (702bp) protein (234aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPJ8_9GAMM
methylase involved in ubiquinone/menaquinone biosynthesis
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_3418_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8683..9447
DNA (765bp) protein (255aa)
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000256|HAMAP-Rule:MF_01374}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Hydroxyacylglutathione hydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPJ7_9GAMM
hydroxyacylglutathione hydrolase
scnpilot_solids2_trim150_scaffold_3418_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9444..10613
DNA (1170bp) protein (390aa)
Membrane-bound lytic murein transglycosylase D n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJX4_9GAMM
Membrane-bound lytic murein transglycosylase D {ECO:0000313|EMBL:EIL87515.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
LysM repeat-containing protein
scnpilot_solids2_trim150_scaffold_3418_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10726..12636)
DNA (1911bp) protein (637aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Parvulin-like peptidyl-prolyl isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR62_9GAMM
parvulin-like peptidyl-prolyl isomerase
scnpilot_solids2_trim150_scaffold_3418_trna_3
unknown

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comp(12795..12868)
DNA (74bp)
transferRNA Asp
scnpilot_solids2_trim150_scaffold_3418_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12846..13124)
DNA (279bp) protein (93aa)
Bacterial nucleoid DNA-binding protein n=3 Tax=Rhodanobacter RepID=I4WR61_9GAMM
bacterial nucleoid DNA-binding protein
Nucleoid DNA-binding protein {ECO:0000313|EMBL:EIL95122.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_3418_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13458..15524)
DNA (2067bp) protein (689aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Lon protease n=1 Tax=Rhodanobacter denitrificans RepID=I4WR60_9GAMM
ATP-dependent proteinase
Displaying 17 items

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