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scnpilot_solids2_trim150_scaffold_4028

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_4028_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..303)
DNA (303bp) protein (101aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSE6_9GAMM
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
scnpilot_solids2_trim150_scaffold_4028_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(397..636)
DNA (240bp) protein (80aa)
BolA superfamily transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSE5_9GAMM
putative transcriptional regulator, BolA superfamily
Putative transcriptional regulator, BolA superfamily {ECO:0000313|EMBL:AGG90203.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_4028_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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792..1802
DNA (1011bp) protein (337aa)
Arabinose 5-phosphate isomerase {ECO:0000256|PIRNR:PIRNR004692}; Short=API {ECO:0000256|PIRNR:PIRNR004692};; EC=5.3.1.13 {ECO:0000256|PIRNR:PIRNR004692};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Arabinose 5-phosphate isomerase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSE4_9GAMM
KpsF/GutQ family protein
scnpilot_solids2_trim150_scaffold_4028_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1869..2420
DNA (552bp) protein (184aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQZ9_9GAMM
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family {ECO:0000313|EMBL:AGG90205.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_4028_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2417..3094
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4T9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94480.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_4028_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3048..3614
DNA (567bp) protein (189aa)
Lipopolysaccharide transport periplasmic protein LptA n=2 Tax=Rhodanobacter denitrificans RepID=M4NJC6_9GAMM
lipopolysaccharide transport periplasmic protein LptA
Lipopolysaccharide transport periplasmic protein LptA {ECO:0000313|EMBL:AGG90207.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_4028_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3619..4338
DNA (720bp) protein (240aa)
ABC transporter ATPase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR02_9GAMM
ABC-type (unclassified) transport system, ATPase component
ABC-type (Unclassified) transport system, ATPase component {ECO:0000313|EMBL:AGG90208.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_4028_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4418..5767
DNA (1350bp) protein (450aa)
RNA polymerase sigma-54 factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WR03_9GAMM
RNA polymerase, sigma 54 subunit, RpoN/SigL
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 8 items

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