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scnpilot_solids2_trim150_scaffold_4462

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_4462_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(85..1065)
DNA (981bp) protein (327aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYV2_9GAMM
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit {ECO:0000313|EMBL:EIL92393.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit
scnpilot_solids2_trim150_scaffold_4462_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1069..2154)
DNA (1086bp) protein (362aa)
Pyruvate dehydrogenase E1 alpha subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKB3_9GAMM rbh
Pyruvate dehydrogenase E1 alpha subunit {ECO:0000313|EMBL:EIL99904.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
pyruvate dehydrogenase E1 component, alpha subunit
scnpilot_solids2_trim150_scaffold_4462_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2423..3271
DNA (849bp) protein (283aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rho
Tryptophan 2,3-dioxygenase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIQ7_9GAMM
tryptophan 2,3-dioxygenase (vermilion)
scnpilot_solids2_trim150_scaffold_4462_4
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3286..3993)
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F18891
ArsR family transcriptional regulator {ECO:0000313|EMBL:AIF45904.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
putative transcriptional regulator
scnpilot_solids2_trim150_scaffold_4462_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4171..5673
DNA (1503bp) protein (501aa)
Amino acid/peptide transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE68_9GAMM rbh
Amino acid/peptide transporter {ECO:0000313|EMBL:EIL97759.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
amino acid/peptide transporter (peptide:H symporter) rbh
scnpilot_solids2_trim150_scaffold_4462_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5858..7303
DNA (1446bp) protein (482aa)
Amino acid/peptide transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKB6_9GAMM
Amino acid/peptide transporter {ECO:0000313|EMBL:EIL99907.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
amino acid/peptide transporter (peptide:H symporter)
scnpilot_solids2_trim150_scaffold_4462_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7427..7888)
DNA (462bp) protein (154aa)
MarR family transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE62_9GAMM
transcriptional regulator
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_4462_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7996..8970
DNA (975bp) protein (325aa)
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYU6_9GAMM
4-hydroxyphenylpyruvate dioxygenase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_4462_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9118..9417
DNA (300bp) protein (100aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter
Homogentisate 1,2-dioxygenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWJ8_9GAMM
excinuclease ABC subunit C
scnpilot_solids2_trim150_scaffold_4462_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9563..10855
DNA (1293bp) protein (431aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter
homogentisate 1,2-dioxygenase (EC:1.13.11.5)
Homogentisate 1,2-dioxygenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYU5_9GAMM
scnpilot_solids2_trim150_scaffold_4462_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10893..11879
DNA (987bp) protein (329aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYU3_9GAMM
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_4462_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12177..13550
DNA (1374bp) protein (458aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Coproporphyrinogen-III oxidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE57_9GAMM
oxygen-independent coproporphyrinogen III oxidase
scnpilot_solids2_trim150_scaffold_4462_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13586..14263
DNA (678bp) protein (226aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWJ4_9GAMM
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:EIL91585.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cAMP-binding protein
Displaying 13 items

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