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scnpilot_solids2_trim150_scaffold_1453

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1453_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..394
DNA (393bp) protein (131aa)
Acriflavin resistance protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLB0_9GAMM
Acriflavin resistance protein {ECO:0000313|EMBL:EIL88001.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cation/multidrug efflux pump
scnpilot_solids2_trim150_scaffold_1453_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

555..3695
DNA (3141bp) protein (1047aa)
Cation/multidrug efflux pump n=1 Tax=Rhodanobacter denitrificans RepID=M4NMC4_9GAMM
cation/multidrug efflux pump
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1453_3
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3831..6881
DNA (3051bp) protein (1017aa)
type III restriction enzyme, res subunit; K01156 type III restriction enzyme [EC:3.1.21.5] rbh
Type III restriction enzyme, res subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2I2_9GAMM rbh
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
scnpilot_solids2_trim150_scaffold_1453_4
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7101..8186
DNA (1086bp) protein (362aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21R68_RHOFD
filamentation induced by cAMP protein Fic
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
scnpilot_solids2_trim150_scaffold_1453_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8192..11035
DNA (2844bp) protein (948aa)
DNA methylase N-4/N-6 domain-containing protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJQ1_9GAMM rbh
DNA methylase N-4/N-6 domain-containing protein {ECO:0000313|EMBL:EIL87442.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
DNA methylase
scnpilot_solids2_trim150_scaffold_1453_6
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11046..14831
DNA (3786bp) protein (1262aa)
Putative helicase n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PI92_9BURK rbh
Putative helicase {ECO:0000313|EMBL:ELX11327.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
viral RNA helicase rbh
scnpilot_solids2_trim150_scaffold_1453_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14832..15911
DNA (1080bp) protein (360aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
UvrD/REP helicase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJP9_9GAMM
UvrD/REP helicase
scnpilot_solids2_trim150_scaffold_1453_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15889..16875
DNA (987bp) protein (329aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
UvrD/REP helicase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJP9_9GAMM
UvrD/REP helicase
scnpilot_solids2_trim150_scaffold_1453_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16942..17274
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2P3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93734.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LysM domain-containing protein
scnpilot_solids2_trim150_scaffold_1453_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17519..18052
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFA7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98148.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1453_11
unknown

Not on your lists

comp(18341..18505)
DNA (165bp) protein (55aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1453_12
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18526..20250
DNA (1725bp) protein (575aa)
isocitrate dehydrogenase (EC:1.1.1.42)
isocitrate dehydrogenase n=1 Tax=Geovibrio thiophilus RepID=UPI0003B6420D
Tax=CG_Thiomicrospira_01
scnpilot_solids2_trim150_scaffold_1453_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20269..21213)
DNA (945bp) protein (315aa)
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPI3_9GAMM
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein {ECO:0000313|EMBL:EIL89124.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative oxidoreductase, aryl-alcohol dehydrogenase like protein
scnpilot_solids2_trim150_scaffold_1453_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21316..21513)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NIR1_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90794.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1453_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21622..22542
DNA (921bp) protein (307aa)
Transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=M4NMB2_9GAMM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGG90793.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1453_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22616..23728
DNA (1113bp) protein (371aa)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
S-(Hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFC2_9GAMM rbh
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
scnpilot_solids2_trim150_scaffold_1453_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23963..24922
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMS1_9GAMM
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:AGG90790.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1453_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24946..25482
DNA (537bp) protein (179aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
pseudouridine synthase family protein (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFC5_9GAMM
scnpilot_solids2_trim150_scaffold_1453_19
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25544..26341)
DNA (798bp) protein (266aa)
Mg-dependent DNase (EC:3.1.21.-)
Mg-dependent DNase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPJ3_9GAMM
Mg-dependent DNase {ECO:0000313|EMBL:EIL89134.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_1453_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26547..28139
DNA (1593bp) protein (531aa)
Peptidase M4, thermolysin n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VQB5_9GAMM
Peptidase M4, thermolysin {ECO:0000313|EMBL:EIL89406.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Zinc metalloprotease (elastase)
scnpilot_solids2_trim150_scaffold_1453_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28274..30724
DNA (2451bp) protein (817aa)
Uncharacterized protein (Fragment) n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W370_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93911.1}; Flags: Fragment;; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
outer membrane protein
scnpilot_solids2_trim150_scaffold_1453_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30874..31740
DNA (867bp) protein (289aa)
Type II secretion system protein E (GspE) n=1 Tax=Rhodanobacter denitrificans RepID=M4NL36_9GAMM
type II secretion system protein E (GspE)
Type II secretion system protein E (GspE) {ECO:0000313|EMBL:AGG90787.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 22 items

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