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scnpilot_solids2_trim150_scaffold_1473

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1473_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1115)
DNA (1113bp) protein (371aa)
Type IV-A pilus assembly ATPase PilB n=1 Tax=Rhodanobacter denitrificans RepID=M4NBN9_9GAMM
type IV-A pilus assembly ATPase PilB
Type IV-A pilus assembly ATPase PilB {ECO:0000313|EMBL:AGG88070.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1473_2
Xanthomonas hortorum, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1360..2748)
DNA (1389bp) protein (463aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7Z891_9XANT rbh
Filamentation induced by cAMP protein Fic {ECO:0000313|EMBL:ETC86098.1}; TaxID=863365 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas hortorum pv. carotae str. M081.;"
filamentation induced by cAMP protein fic rbh
scnpilot_solids2_trim150_scaffold_1473_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3388..4059
DNA (672bp) protein (224aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WIZ1_9GAMM
glycosyl transferase
Glycosyl transferase family protein {ECO:0000313|EMBL:EIL97152.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_1473_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4133..5305
DNA (1173bp) protein (391aa)
Group 1 glycosyl transferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZW1_9GAMM
Group 1 glycosyl transferase {ECO:0000313|EMBL:EIL92752.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
group 1 glycosyl transferase rbh
scnpilot_solids2_trim150_scaffold_1473_5
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5331..6068
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003809473 rbh
SAM-binding motif {ECO:0000313|EMBL:AIF47255.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
putative methyltransferase
scnpilot_solids2_trim150_scaffold_1473_6
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6197..7312)
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000310A182
Group 1 glycosyl transferase {ECO:0000313|EMBL:AIF47256.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
group 1 glycosyl transferase
scnpilot_solids2_trim150_scaffold_1473_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7315..7722)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLZ3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88234.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein; K07062
scnpilot_solids2_trim150_scaffold_1473_8
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7719..7985)
DNA (267bp) protein (89aa)
Transcriptional regulator, AbrB family n=2 Tax=Nitrosococcus oceani RepID=Q3J855_NITOC
AbrB family transcriptional regulator
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:ABA58991.1}; TaxID=323261 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848).;"
scnpilot_solids2_trim150_scaffold_1473_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8091..9209)
DNA (1119bp) protein (373aa)
UDP-galactopyranose mutase (EC:5.4.99.9); K01854 UDP-galactopyranose mutase [EC:5.4.99.9]
UDP-galactopyranose mutase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLZ1_9GAMM rbh
UDP-galactopyranose mutase {ECO:0000313|EMBL:EIL88232.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_1473_10
unknown

Not on your lists

comp(9732..9998)
DNA (267bp) protein (89aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1473_11
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10161..10424
DNA (264bp) protein (88aa)
Methyltransferase type 12 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQR4_PSEUU
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:ADV26513.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids2_trim150_scaffold_1473_12
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10421..11020
DNA (600bp) protein (200aa)
HAD-superfamily hydrolase, subfamily IB (PSPase-like) n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQR5_PSEUU
HAD-superfamily hydrolase
HAD-superfamily hydrolase, subfamily IB (PSPase-like) {ECO:0000313|EMBL:ADV26514.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids2_trim150_scaffold_1473_13
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10996..11700
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VPD9_9GAMM
hypothetical protein; K07281
Uncharacterized protein {ECO:0000313|EMBL:CBL46681.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
scnpilot_solids2_trim150_scaffold_1473_14
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11687..12637
DNA (951bp) protein (317aa)
lipopolysaccharide biosynthsis protein; K07271 lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]
LICD family protein n=2 Tax=Bacteroidales RepID=D0TB12_9BACE
LicD family protein {ECO:0000313|EMBL:KDS57660.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
scnpilot_solids2_trim150_scaffold_1473_15
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12612..13910)
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BUA1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EAR20775.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
polysaccharide biosynthesis protein rbh
scnpilot_solids2_trim150_scaffold_1473_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13971..15953)
DNA (1983bp) protein (661aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJY1_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88081.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1473_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15950..18151)
DNA (2202bp) protein (734aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WIX9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97321.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1473_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18218..18661)
DNA (444bp) protein (148aa)
Class II pilin PilE n=1 Tax=Rhodanobacter denitrificans RepID=I4WIX8_9GAMM
Class II pilin PilE {ECO:0000313|EMBL:EIL97165.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein
scnpilot_solids2_trim150_scaffold_1473_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18952..19395)
DNA (444bp) protein (148aa)
Fimbrial protein P9-2 Pilin n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCH5_9GAMM
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGG88084.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1473_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19541..21628)
DNA (2088bp) protein (696aa)
Lipopolysaccharide modification acyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCH6_9GAMM rbh
Lipopolysaccharide modification acyltransferase {ECO:0000313|EMBL:EIL97167.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
acyltransferase 3 rbh
scnpilot_solids2_trim150_scaffold_1473_21
Bartonella doshiae, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22006..22329)
DNA (324bp) protein (108aa)
Uncharacterized protein n=3 Tax=Bartonella RepID=J0YWT1_BARDO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJF79623.1}; TaxID=1094553 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella doshiae NCTC 12862 = ATCC 700133.;"
scnpilot_solids2_trim150_scaffold_1473_22
Gloeocapsa sp. PCC 73106, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(22329..22577)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Gloeocapsa sp. PCC 73106 RepID=L8LN45_9CHRO
Uncharacterized protein {ECO:0000313|EMBL:ELR98933.1}; TaxID=102232 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;" source="Gloeocapsa sp. PCC 73106.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1473_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22769..24889
DNA (2121bp) protein (707aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCH7_9GAMM
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:EIL97168.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
dipeptidyl aminopeptidase/acylaminoacyl peptidase
scnpilot_solids2_trim150_scaffold_1473_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25198..26277)
DNA (1080bp) protein (360aa)
A/G-specific DNA-adenine glycosylase (EC:3.2.2.-)
A/G-specific adenine glycosylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRW6_9GAMM
A/G-specific adenine glycosylase {ECO:0000313|EMBL:EIM02208.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_1473_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26288..27343)
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQR4_9GAMM
uncharacterized protein involved in outer membrane biogenesis
Uncharacterized protein involved in outer membrane biogenesis {ECO:0000313|EMBL:AGG90106.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1473_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27367..28512)
DNA (1146bp) protein (382aa)
Signal recognition particle receptor FtsY n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0B9_9GAMM
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
signal recognition particle-docking protein FtsY
scnpilot_solids2_trim150_scaffold_1473_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28587..29162
DNA (576bp) protein (192aa)
Ribosomal RNA small subunit methyltransferase D {ECO:0000256|PIRNR:PIRNR004553}; EC=2.1.1.171 {ECO:0000256|PIRNR:PIRNR004553};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
16S rRNA m(2)G-966 methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NGT5_9GAMM
16S rRNA m(2)G-966 methyltransferase
scnpilot_solids2_trim150_scaffold_1473_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29567..30013
DNA (447bp) protein (149aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
pantetheine-phosphate adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQR1_9GAMM
Displaying 28 items

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