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scnpilot_solids2_trim150_scaffold_112_curated

Search features with annotation key words

Displaying items 211-240 of 245 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_112_curated_211
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

231136..231432
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HHL7_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:AHK04603.1}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
scnpilot_solids2_trim150_scaffold_112_curated_212
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(231599..233158)
DNA (1560bp) protein (520aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CV12_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78605.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_112_curated_213
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(233238..234329)
DNA (1092bp) protein (364aa)
Transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1U2_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EYR78606.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_112_curated_214
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

234651..235397
DNA (747bp) protein (249aa)
ABC transporter-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6D2_9RHIZ
ABC transporter-like protein {ECO:0000313|EMBL:EYR78607.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter-like protein
scnpilot_solids2_trim150_scaffold_112_curated_215
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

235394..236185
DNA (792bp) protein (264aa)
Putative aliphatic sulfonates transport permease protein SsuC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXH0_9RHIZ
Putative aliphatic sulfonates transport permease protein SsuC {ECO:0000313|EMBL:EYR78608.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
taurine ABC transporter permease; K15552 taurine transport system permease protein
scnpilot_solids2_trim150_scaffold_112_curated_216
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

236182..236952
DNA (771bp) protein (257aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHF5_9RHIZ
ABC-type nitrate/sulfonate/bicarbonate transport system permease component {ECO:0000313|EMBL:EYR78609.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Binding-protein-dependent transport systems inner membrane component; K15554 sulfonate transport system permease protein
scnpilot_solids2_trim150_scaffold_112_curated_217
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

237001..238056
DNA (1056bp) protein (352aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EYR78610.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein id=3348585 bin=GWF2_Methylomirabilis_70_14 species=Bacillus methanolicus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
taurine ABC transporter substrate binding protein; K15551 taurine transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_112_curated_218
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

238109..239173
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ06_9RHIZ
Dehydrogenase {ECO:0000313|EMBL:EYR78611.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oxidoreductase domain-containing protein
scnpilot_solids2_trim150_scaffold_112_curated_219
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

239170..240225
DNA (1056bp) protein (352aa)
Putative oxidoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUF5_9RHIZ
Putative oxidoreductase {ECO:0000313|EMBL:EYR78612.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative oxidoreductase
scnpilot_solids2_trim150_scaffold_112_curated_220
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

240222..241214
DNA (993bp) protein (331aa)
Glucokinase Glk {ECO:0000313|EMBL:EYR78613.1}; EC=2.7.1.2 {ECO:0000313|EMBL:EYR78613.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2]
Glucokinase Glk n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERX8_9RHIZ
scnpilot_solids2_trim150_scaffold_112_curated_221
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(241185..242684)
DNA (1500bp) protein (500aa)
sulfatase n=1 Tax=Rhizobium mongolense RepID=UPI0003B55E7B
Sulfatase protein {ECO:0000313|EMBL:AJD45290.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
sulfatase
scnpilot_solids2_trim150_scaffold_112_curated_222
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(242749..243801)
DNA (1053bp) protein (351aa)
ATPase component of ABC-type sugar transporter n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KQC2_MESAW
ATPase component of ABC-type sugar transporter
ATPase component of ABC-type sugar transporter {ECO:0000313|EMBL:AGB46214.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
scnpilot_solids2_trim150_scaffold_112_curated_223
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(243817..244647)
DNA (831bp) protein (277aa)
Putative ABC transporter permease protein n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=Q1WLK0_SINMM
Putative ABC transporter permease protein {ECO:0000313|EMBL:ABA56000.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
putative ABC-type phosphate transport system, permease component
scnpilot_solids2_trim150_scaffold_112_curated_224
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(244647..245576)
DNA (930bp) protein (310aa)
Putative ABC transporter permease protein n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=Q1WLK1_SINMM
Putative ABC transporter permease protein {ECO:0000313|EMBL:CDH80919.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
sugar ABC transporter permease; K02025 multiple sugar transport system permease protein
scnpilot_solids2_trim150_scaffold_112_curated_225
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(245757..247115)
DNA (1359bp) protein (453aa)
Probable ABC transporter binding protein n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=Q1WLK2_SINMM
Probable ABC transporter binding protein {ECO:0000313|EMBL:ABA55998.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
putative ABC-type sugar transport system, periplasmic component
scnpilot_solids2_trim150_scaffold_112_curated_226
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

247313..248233
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00037CB521
putative Transcriptional regulator, LysR family
Putative Transcriptional regulator, LysR family {ECO:0000313|EMBL:CCO60633.1}; TaxID=28173 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchritudo.;"
scnpilot_solids2_trim150_scaffold_112_curated_227
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

248330..249703
DNA (1374bp) protein (458aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003604C03
Arylsulfatase {ECO:0000313|EMBL:KIL38786.1}; TaxID=1590651 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. VKM B-2647.;"
Arylsulfatase A and related enzymes
scnpilot_solids2_trim150_scaffold_112_curated_228
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(249772..250818)
DNA (1047bp) protein (349aa)
Gluconate dehydratase (EC:4.2.1.39)
L-alanine-DL-glutamate epimerase n=1 Tax=Burkholderia dolosa AUO158 RepID=A2WE56_9BURK
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
scnpilot_solids2_trim150_scaffold_112_curated_229
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(251083..251985)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FEBE66
Gluconolactonase {ECO:0000313|EMBL:CDX28507.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_112_curated_230
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(251989..253032)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DBF52C
Transcriptional regulator, LacI family {ECO:0000313|EMBL:CDX36224.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
LacI family transcriptional regulator; K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
scnpilot_solids2_trim150_scaffold_112_curated_231
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

253156..253998
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D691F2
Putative taurine transporter subunit membrane component of ABC superfamily {ECO:0000313|EMBL:CDX28510.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ssuC; putative sulfonate ABC transporter, permease protein
scnpilot_solids2_trim150_scaffold_112_curated_232
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

253998..254777
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FAE039
Taurine transporter subunit membrane component of ABC superfamily {ECO:0000313|EMBL:CDX28511.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
scnpilot_solids2_trim150_scaffold_112_curated_233
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

254765..255595
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000310751F
Taurine transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CDX28515.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter ATP-binding protein
scnpilot_solids2_trim150_scaffold_112_curated_234
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

255630..256868
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000304D4AA
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:CDX43662.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
aliphatic sulfonate ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_112_curated_235
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

256910..257806
DNA (897bp) protein (299aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K08318 putative dehydrogenase [EC:1.1.-.-]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003675C2C
Putative oxidoreductase with NAD(P)-binding Rossmann-fold domain {ECO:0000313|EMBL:CDX54587.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
scnpilot_solids2_trim150_scaffold_112_curated_236
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

257822..258841
DNA (1020bp) protein (340aa)
pyridoxal 4-dehydrogenase (EC:1.1.1.107)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000309A4ED
D-threo-aldose 1-dehydrogenase {ECO:0000313|EMBL:KJB94169.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
scnpilot_solids2_trim150_scaffold_112_curated_237
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

258959..260125
DNA (1167bp) protein (389aa)
Altronate dehydratase {ECO:0000313|EMBL:CDX28509.1}; EC=4.2.1.7 {ECO:0000313|EMBL:CDX28509.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Altronate dehydratase (EC:4.2.1.7); K01685 altronate hydrolase [EC:4.2.1.7]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D8E5F0
scnpilot_solids2_trim150_scaffold_112_curated_238
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

260122..260433
DNA (312bp) protein (104aa)
UxaA family hydrolase; K01685 altronate hydrolase [EC:4.2.1.7]
UxaA family hydrolase n=2 Tax=Paenibacillus mucilaginosus RepID=F8FCT2_PAEMK
D-galactarate dehydratase {ECO:0000313|EMBL:AFH60514.1}; TaxID=997761 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus K02.;"
scnpilot_solids2_trim150_scaffold_112_curated_239
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(260636..261592)
DNA (957bp) protein (319aa)
Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM58_NITHX
peptidase S1 and S6, chymotrypsin/Hap
Peptidase S1 and S6, chymotrypsin/Hap {ECO:0000313|EMBL:ABE62689.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_112_curated_240
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

261775..262647
DNA (873bp) protein (291aa)
PDZ/DHR/GLGF protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPG8_NITHX
hypothetical protein
PDZ/DHR/GLGF protein {ECO:0000313|EMBL:ABE61879.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying items 211-240 of 245 in total

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