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scnpilot_solids2_trim150_scaffold_134_curated

Search features with annotation key words

Displaying items 31-60 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_134_curated_31
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28594..28821
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BT57_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGF70640.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
scnpilot_solids2_trim150_scaffold_134_curated_32
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28802..29965
DNA (1164bp) protein (388aa)
Conjugal transfer protein TrbL n=2 Tax=Oligotropha carboxidovorans RepID=F8BQU8_OLICM
Conjugal transfer protein TrbL {ECO:0000313|EMBL:KGF70639.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
trbL; conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
scnpilot_solids2_trim150_scaffold_134_curated_33
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29974..30636
DNA (663bp) protein (221aa)
Conjugal transfer protein TrbF n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BSQ7_9RHIZ
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KGF70638.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
trbF; conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
scnpilot_solids2_trim150_scaffold_134_curated_34
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30656..31480
DNA (825bp) protein (275aa)
Conjugal transfer protein TrbG n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BSQ8_9RHIZ
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KGF70637.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
trbG; conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
scnpilot_solids2_trim150_scaffold_134_curated_35
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31486..31953
DNA (468bp) protein (156aa)
Conjugal transfer protein TrbH n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BSQ9_9RHIZ
Conjugal transfer protein TrbH {ECO:0000313|EMBL:EIM72611.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
trbH; conjugal transfer protein TrbH
scnpilot_solids2_trim150_scaffold_134_curated_36
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31950..33245
DNA (1296bp) protein (432aa)
Conjugal transfer protein TrbI n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BSR0_9RHIZ
Conjugal transfer protein TrbI {ECO:0000313|EMBL:KGF70635.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
trbI; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
scnpilot_solids2_trim150_scaffold_134_curated_37
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33242..34030
DNA (789bp) protein (263aa)
Putative transcriptional activator protein TraR n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BSR1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGF70634.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
luxR; regulatory protein LuxR
scnpilot_solids2_trim150_scaffold_134_curated_38
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34079..34585)
DNA (507bp) protein (169aa)
UPI0003CE69C4 related cluster n=1 Tax=unknown RepID=UPI0003CE69C4
Uncharacterized protein {ECO:0000313|EMBL:ESY73459.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
c-type cytochrome; K08738 cytochrome c
scnpilot_solids2_trim150_scaffold_134_curated_39
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34585..35316)
DNA (732bp) protein (244aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia ambifaria (strain MC40-6) RepID=B1YXM6_BURA4
Short chain dehydrogenase {ECO:0000313|EMBL:AJE45823.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
scnpilot_solids2_trim150_scaffold_134_curated_40
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35521..36363
DNA (843bp) protein (281aa)
LysR family transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2K7Q5_9PROT
LysR family transcriptional regulator {ECO:0000313|EMBL:AJE45824.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
LysR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_134_curated_41
Burkholderia andropogonis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36484..37263
DNA (780bp) protein (260aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T3R2_CAUSK
Short-chain dehydrogenase {ECO:0000313|EMBL:KKB62986.1}; TaxID=28092 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia andropogonis.;"
short-chain dehydrogenase/reductase SDR; K07124
scnpilot_solids2_trim150_scaffold_134_curated_42
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37267..37911
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI00037DDA56
transcriptional regulator
Tax=RBG_16_Gamma2_60_9_curated
scnpilot_solids2_trim150_scaffold_134_curated_43
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37937..38530)
DNA (594bp) protein (198aa)
Regulatory protein TetR n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V3I7_TERSS
TetR family transcriptional regulator {ECO:0000313|EMBL:AJE45831.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
regulatory protein TetR
scnpilot_solids2_trim150_scaffold_134_curated_44
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38625..39455
DNA (831bp) protein (277aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V3I8_TERSS
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AJE45832.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
short-chain dehydrogenase/reductase SDR
scnpilot_solids2_trim150_scaffold_134_curated_45
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39517..40410)
DNA (894bp) protein (298aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Pseudomonas sp. CFII64 RepID=S6H270_9PSED
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:AJE45805.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
NAD-dependent epimerase/dehydratase
scnpilot_solids2_trim150_scaffold_134_curated_46
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40507..41340
DNA (834bp) protein (278aa)
XRE family transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037D684A
XRE family transcriptional regulator {ECO:0000313|EMBL:AJE45806.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
DNA-binding protein
scnpilot_solids2_trim150_scaffold_134_curated_47
unknown

Not on your lists

comp(41544..41855)
DNA (312bp) protein (104aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_134_curated_48
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42156..42827)
DNA (672bp) protein (224aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
traI; acyl-homoserine-lactone synthase TraI (EC:2.3.1.184)
Autoinducer synthesis protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BSR3_9RHIZ
scnpilot_solids2_trim150_scaffold_134_curated_49
Mesorhizobium tianshanense, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42911..43642)
DNA (732bp) protein (244aa)
Quorum sensing regulator n=1 Tax=Mesorhizobium tianshanense RepID=B5A461_9RHIZ
Quorum sensing regulator {ECO:0000313|EMBL:ACF28617.1}; TaxID=39844 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium tianshanense.;"
LuxR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_134_curated_50
Planktomarina temperata, Planktomarina, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43889..45994)
DNA (2106bp) protein (702aa)
Fatty acid oxidation complex alpha subunit FadJ {ECO:0000313|EMBL:AII88079.1}; EC=1.1.1.35 {ECO:0000313|EMBL:AII88079.1};; EC=4.2.1.17 {ECO:0000313|EMBL:AII88079.1};; EC=5.1.2.3 {ECO:0000313|EMBL:AII88079.1};; TaxID=666509 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Planktomarina.;" source="Planktomarina temperata RCA23.;"
NAD-binding 3-hydroxyacyl-CoA dehydrogenase protein; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2KA94_9BURK
scnpilot_solids2_trim150_scaffold_134_curated_51
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46057..47145)
DNA (1089bp) protein (363aa)
ferredoxin n=1 Tax=Amorphus coralli RepID=UPI000381CD2E
Uncharacterized protein {ECO:0000313|EMBL:KEJ93902.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
phenylacetate-CoA oxygenase/reductase subunit PaaK; K02613 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
scnpilot_solids2_trim150_scaffold_134_curated_52
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47242..47757)
DNA (516bp) protein (172aa)
Phenylacetic acid degradation protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D480_BRAJP
Phenylacetate-CoA oxygenase {ECO:0000313|EMBL:KEJ93901.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
phenylacetic acid degradation protein; K02612 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
scnpilot_solids2_trim150_scaffold_134_curated_53
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47751..48512)
DNA (762bp) protein (254aa)
paaC; phenylacetic acid degradation protein paaC; K02611 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
Phenylacetic acid degradation protein paaC n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EFQ0_BRASB
Phenylacetic acid degradation protein {ECO:0000313|EMBL:KEJ93900.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
scnpilot_solids2_trim150_scaffold_134_curated_54
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48512..48805)
DNA (294bp) protein (98aa)
Putative phenylacetic acid degradation PaaH n=1 Tax=uncultured bacterium CBNPD1 BAC clone 67 RepID=B1N6F8_9BACT
Phenylacetate-CoA oxygenase {ECO:0000313|EMBL:KEJ93899.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
paaB; phenylacetic acid degradation protein; K02610 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
scnpilot_solids2_trim150_scaffold_134_curated_55
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48850..49833)
DNA (984bp) protein (328aa)
paaA; phenylacetate-CoA oxygenase subunit PaaA; K02609 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]
Phenylacetate-CoA oxygenase subunit PaaA n=1 Tax=Nitratireductor indicus C115 RepID=K2P877_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEJ93898.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
scnpilot_solids2_trim150_scaffold_134_curated_56
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(49941..51128)
DNA (1188bp) protein (396aa)
Probable thiolase id=2937759 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acetyl-CoA acetyltransferase
Tax=GWC2_Rokubacteria_70_16_curated
scnpilot_solids2_trim150_scaffold_134_curated_57
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51261..51968)
DNA (708bp) protein (236aa)
High-affinity branched-chain amino acid transport, ATP-binding protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XXS0_PARAH
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEJ93897.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
high-affinity branched-chain amino acid transport, ATP-binding protein
scnpilot_solids2_trim150_scaffold_134_curated_58
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51961..52740)
DNA (780bp) protein (260aa)
High-affinity branched-chain amino acid transport ATP-binding protein BraF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6J1_9RHIZ
Leucine/isoleucine/valine transporter ATP-binding subunit {ECO:0000313|EMBL:KEJ93896.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_134_curated_59
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52733..53695)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036B0B63
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KEJ93895.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_134_curated_60
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53682..54554)
DNA (873bp) protein (291aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07SX8_RHOP5
ABC transporter permease {ECO:0000313|EMBL:KEJ93894.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
Displaying items 31-60 of 104 in total

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