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scnpilot_solids2_trim150_scaffold_134_curated

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_134_curated_1
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75..599)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7F9R3_9RHIZ
RES domain protein {ECO:0000313|EMBL:CDX20480.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
res domain protein
scnpilot_solids2_trim150_scaffold_134_curated_2
Brucella ceti, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(596..985)
DNA (390bp) protein (130aa)
Uncharacterized protein n=26 Tax=Brucella RepID=N7TU94_BRUAO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEH13883.1}; TaxID=595497 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella ceti str. Cudo.;"
scnpilot_solids2_trim150_scaffold_134_curated_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1454..2755
DNA (1302bp) protein (434aa)
Putative uncharacterized protein id=2052561 bin=GWB2_Proteobacteria_55_19 species=Rhizobium leguminosarum genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAK07624.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
scnpilot_solids2_trim150_scaffold_134_curated_4
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2935..3384)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037A39DE
Uncharacterized protein {ECO:0000313|EMBL:KJB93104.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
putative transcriptional regulator
scnpilot_solids2_trim150_scaffold_134_curated_5
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3481..4356
DNA (876bp) protein (292aa)
Putative uncharacterized protein n=1 Tax=Citreicella sp. SE45 RepID=D0D210_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KJB93103.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
ytfG; hypothetical protein
scnpilot_solids2_trim150_scaffold_134_curated_6
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4392..5297
DNA (906bp) protein (302aa)
GroES-like protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F0H7_9DELT
Alcohol dehydrogenase zinc-binding domain-containing protein {ECO:0000313|EMBL:AJE45827.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
alcohol dehydrogenase zinc-binding domain-containing protein
scnpilot_solids2_trim150_scaffold_134_curated_7
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5375..6418
DNA (1044bp) protein (348aa)
Putative oxidoreductase, LLM family n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2A1_9RHIZ
Oxidoreductase {ECO:0000313|EMBL:AJE47087.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
luciferase family protein
scnpilot_solids2_trim150_scaffold_134_curated_8
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6672..6860)
DNA (189bp) protein (63aa)
Glutathione S-transferase, omega {ECO:0000313|EMBL:EPX85228.1}; EC=2.5.1.18 {ECO:0000313|EMBL:EPX85228.1};; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
Glutathione S-transferase, omega n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QZW6_9RHOB
putative glutathione S-transferase; K07393 putative glutathione S-transferase
scnpilot_solids2_trim150_scaffold_134_curated_9
Streptomyces sp. HGB0020, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7055..7825
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Streptomyces sp. HGB0020 RepID=S2YQ42_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EPD64200.1}; TaxID=1078086 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HGB0020.;"
Transcriptional regulator, ArsR family
scnpilot_solids2_trim150_scaffold_134_curated_10
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7857..8273
DNA (417bp) protein (139aa)
aldehyde-activating protein n=1 Tax=Kaistia granuli RepID=UPI0003635582
Glutathione-dependent formaldehyde-activating protein {ECO:0000313|EMBL:EHH11078.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_134_curated_11
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8426..9187
DNA (762bp) protein (254aa)
NADP oxidoreductase coenzyme F420-dependent n=3 Tax=Serratia RepID=G0B8K0_SERSA
coenzyme F420-dependent NADP oxidoreductase; K06988
NADP oxidoreductase coenzyme F420-dependent {ECO:0000313|EMBL:ACA91658.1}; TaxID=406425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia (strain MC0-3).;"
scnpilot_solids2_trim150_scaffold_134_curated_12
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9174..9941)
DNA (768bp) protein (256aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SUA9_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA04132.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
scnpilot_solids2_trim150_scaffold_134_curated_13
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9947..12244)
DNA (2298bp) protein (766aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium JLT2015 RepID=M2SDB3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EMD83330.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_134_curated_14
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12251..13417)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium JLT2015 RepID=M2TNN6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EMD83331.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_134_curated_15
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13529..13753)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036D4A82
Uncharacterized protein {ECO:0000313|EMBL:KJS24196.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_134_curated_16
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13855..14946
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003664CD2
Transcriptional regulator {ECO:0000313|EMBL:KJB91313.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
helix-turn-helix domain-containing protein
scnpilot_solids2_trim150_scaffold_134_curated_17
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14934..15449
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037A878B
Uncharacterized protein {ECO:0000313|EMBL:KJB91314.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_134_curated_18
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15645..16028
DNA (384bp) protein (128aa)
Transposase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EZ28_9RHIZ
Transposase {ECO:0000313|EMBL:CCV09215.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
transposase
scnpilot_solids2_trim150_scaffold_134_curated_19
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16082..16588
DNA (507bp) protein (169aa)
UPI0003CF0DD5 related cluster n=1 Tax=unknown RepID=UPI0003CF0DD5
Transposase {ECO:0000313|EMBL:ESW80770.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
transposase
scnpilot_solids2_trim150_scaffold_134_curated_20
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16631..17737)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NQY3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF40259.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_134_curated_21
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18020..18961
DNA (942bp) protein (314aa)
Resolvase, N terminal domain family protein n=1 Tax=Nitratireductor indicus C115 RepID=K2MYD6_9RHIZ
Resolvase, N terminal domain family protein {ECO:0000313|EMBL:EKF40258.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
Resolvase, N terminal domain family
scnpilot_solids2_trim150_scaffold_134_curated_22
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19050..19259
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BT50_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB07150.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_134_curated_23
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19303..20607)
DNA (1305bp) protein (435aa)
Replication initiation protein RepC n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BT51_9RHIZ
Replication initiation protein RepC {ECO:0000313|EMBL:KGF70648.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
replication initiation protein RepC
scnpilot_solids2_trim150_scaffold_134_curated_24
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20798..21802)
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000378F96C
RepB {ECO:0000313|EMBL:AHH29569.1}; TaxID=1079800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum.;"
repBa1; plasmid partitioning protein RepB
scnpilot_solids2_trim150_scaffold_134_curated_25
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22011..23288)
DNA (1278bp) protein (426aa)
chromosome partitioning protein ParA n=1 Tax=Martelella mediterranea RepID=UPI00037ECE88
RepA {ECO:0000313|EMBL:CDN95699.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
repAa1; plasmid-partitioning protein RepA
scnpilot_solids2_trim150_scaffold_134_curated_26
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23744..24715
DNA (972bp) protein (324aa)
Conjugal transfer protein TrbB n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BT53_9RHIZ
Conjugal transfer protein TrbB {ECO:0000313|EMBL:KGF70645.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
trbB; conjugal transfer protein TrbB; K03196 type IV secretion system protein VirB11
scnpilot_solids2_trim150_scaffold_134_curated_27
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24705..25079
DNA (375bp) protein (125aa)
Conjugal transfer protein TrbC n=1 Tax=Nitratireductor indicus C115 RepID=K2PGN2_9RHIZ
Conjugal transfer protein TrbC {ECO:0000313|EMBL:EKF40252.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
trbCa; conjugal transfer protein TrbC
scnpilot_solids2_trim150_scaffold_134_curated_28
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25072..25371
DNA (300bp) protein (100aa)
Conjugal transfer protein TrbD n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BT55_9RHIZ
Conjugal transfer protein TrbD {ECO:0000313|EMBL:KGF70643.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
trbD; conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
scnpilot_solids2_trim150_scaffold_134_curated_29
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25378..27828
DNA (2451bp) protein (817aa)
Type IV secretion/conjugal transfer ATPase, VirB4 family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF56_NITHX
Conjugal transfer protein TrbE {ECO:0000313|EMBL:KKB84613.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4
scnpilot_solids2_trim150_scaffold_134_curated_30
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27800..28597
DNA (798bp) protein (266aa)
Conjugal transfer protein TrbJ n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BT56_9RHIZ
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KGF70641.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
trbJ; conjugal transfer protein TrbJ
Displaying items 1-30 of 104 in total

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