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scnpilot_solids2_trim150_scaffold_479_curated

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_479_curated_1
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..241
DNA (240bp) protein (80aa)
Hydantoinase A id=3859514 bin=GWF2_Methylomirabilis_70_14 species=Azorhizobium caulinodans genus=Azorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hydantoinase A
Hydantoinase A {ECO:0000313|EMBL:BAF88726.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
scnpilot_solids2_trim150_scaffold_479_curated_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(691..1008)
DNA (318bp) protein (106aa)
Transposase IS4 family protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I558_RHOVT
Transposase {ECO:0000313|EMBL:AHK47101.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
transposase IS4 family protein
scnpilot_solids2_trim150_scaffold_479_curated_3
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1077..1445)
DNA (369bp) protein (123aa)
Transposase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I559_RHOVT
Transposase {ECO:0000313|EMBL:EXL06944.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
transposase
scnpilot_solids2_trim150_scaffold_479_curated_4
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1899..2702)
DNA (804bp) protein (268aa)
Short chain dehydrogenase {ECO:0000313|EMBL:CCF18328.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CCF18328.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
short chain dehydrogenase (EC:1.-.-.-); K00540 [EC:1.-.-.-]
3-oxoacyl-ACP reductase n=1 Tax=Martelella mediterranea RepID=UPI0003754212
scnpilot_solids2_trim150_scaffold_479_curated_5
Roseivivax halodurans, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2699..3577)
DNA (879bp) protein (293aa)
Amidohydrolase 2 n=1 Tax=Rhizobium sp. RepID=L0NDE4_RHISP
2-pyrone-4,6-dicarboxylate hydrolase {ECO:0000313|EMBL:ETX13370.1}; TaxID=1449350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax halodurans JCM 10272.;"
putative amidohydrolase
scnpilot_solids2_trim150_scaffold_479_curated_6
Roseivivax halodurans, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3570..4136)
DNA (567bp) protein (189aa)
cation/multidrug efflux pump; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000360A56D
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:ETX13369.1}; TaxID=1449350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax halodurans JCM 10272.;"
scnpilot_solids2_trim150_scaffold_479_curated_7
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4133..4783)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NB83_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF18325.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
glutathione S-transferase domain-containing protein
scnpilot_solids2_trim150_scaffold_479_curated_8
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4786..6093)
DNA (1308bp) protein (436aa)
Putative transmembrane protein DctM n=1 Tax=Rhizobium sp. RepID=L0NBR5_RHISP
Putative transmembrane protein DctM {ECO:0000313|EMBL:CCF18324.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
dctM7; TRAP dicarboxylate transport system permease DctM7
scnpilot_solids2_trim150_scaffold_479_curated_9
Roseivivax halodurans, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6090..6614)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NB55_RHISP
Uncharacterized protein {ECO:0000313|EMBL:ETX13366.1}; TaxID=1449350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax halodurans JCM 10272.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_479_curated_10
Roseivivax halodurans, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6679..7686)
DNA (1008bp) protein (336aa)
Putative TRAP-T dicarboxylate transporter DctP subunit n=1 Tax=Rhizobium sp. RepID=L0NDD9_RHISP
Uncharacterized protein {ECO:0000313|EMBL:ETX13365.1}; TaxID=1449350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax halodurans JCM 10272.;"
dctB; family 7 extracellular solute-binding protein
scnpilot_solids2_trim150_scaffold_479_curated_11
Roseivivax halodurans, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7812..8750)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000371A2AB
Uncharacterized protein {ECO:0000313|EMBL:ETX13364.1}; TaxID=1449350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax halodurans JCM 10272.;"
LysR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_479_curated_12
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9173..9364)
DNA (192bp) protein (64aa)
UPI0003CE8308 related cluster n=1 Tax=unknown RepID=UPI0003CE8308
Transposase {ECO:0000313|EMBL:EZQ14570.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
transposase IS4 family protein
scnpilot_solids2_trim150_scaffold_479_curated_13
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9434..10042
DNA (609bp) protein (203aa)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase n=1 Tax=Ochrobactrum intermedium 229E RepID=U4VHB6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KJS09728.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
fumarylacetoacetate (FAA) hydrolase
scnpilot_solids2_trim150_scaffold_479_curated_14
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10027..10299
DNA (273bp) protein (91aa)
ureidoglycolate lyase (EC:4.3.2.3)
Putative fumarylacetoacetate (FAA) hydrolase protein n=1 Tax=Gluconobacter morbifer G707 RepID=G6XJX6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KJS09728.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
scnpilot_solids2_trim150_scaffold_479_curated_15
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10459..11718
DNA (1260bp) protein (420aa)
class V aminotransferase; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Elongation factor P n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FUG3_9RHOB
Elongation factor P {ECO:0000313|EMBL:EDM70235.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. AzwK-3b.;"
scnpilot_solids2_trim150_scaffold_479_curated_16
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11719..12696)
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000319F98B
Uncharacterized protein {ECO:0000313|EMBL:KFL31144.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
LysR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_479_curated_17
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12827..13501
DNA (675bp) protein (225aa)
Rieske (2Fe-2S) iron-sulfur domain-containing protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F1V6_9RHIZ
Rieske (2Fe-2S) iron-sulfur domain-containing protein {ECO:0000313|EMBL:EHS53342.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
oxidoreductase
scnpilot_solids2_trim150_scaffold_479_curated_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13529..14404
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D8A5AE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM30102.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
scnpilot_solids2_trim150_scaffold_479_curated_19
Gluconacetobacter sp. SXCC-1, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14404..15033
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F7C981
Protein gstA {ECO:0000313|EMBL:EGG79118.1}; TaxID=1004836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter sp. SXCC-1.;"
glutathione S-transferase
scnpilot_solids2_trim150_scaffold_479_curated_20
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15033..16004
DNA (972bp) protein (324aa)
vanB family oxidoreductase/oxygenase (EC:1.14.13.82); K03863 vanillate monooxygenase [EC:1.14.13.82]
Oxidoreductase/oxygenase, vanB family {ECO:0000313|EMBL:ABR89931.1}; EC=1.14.13.82 {ECO:0000313|EMBL:ABR89931.1};; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DE1CDD
scnpilot_solids2_trim150_scaffold_479_curated_21
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16076..17653
DNA (1578bp) protein (526aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E735BD
ABC transporter {ECO:0000313|EMBL:AHB77814.1}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
scnpilot_solids2_trim150_scaffold_479_curated_22
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17650..18744
DNA (1095bp) protein (365aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030EDA34
Uncharacterized protein {ECO:0000313|EMBL:EKS31095.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
sugar ABC transporter permease protein
scnpilot_solids2_trim150_scaffold_479_curated_23
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18744..19664
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F52B46
Putative ABC-type transport system, permease component {ECO:0000313|EMBL:EJL49811.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
sugar ABC transporter permease protein
scnpilot_solids2_trim150_scaffold_479_curated_24
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19700..20773
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000308C0C8
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EWY42132.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
basic membrane lipoprotein
scnpilot_solids2_trim150_scaffold_479_curated_25
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20830..21141
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F2E7DA
Uncharacterized protein {ECO:0000313|EMBL:EKF60795.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_479_curated_26
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21172..22296
DNA (1125bp) protein (375aa)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
Alcohol dehydrogenase n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HNZ9_9RHIZ
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
scnpilot_solids2_trim150_scaffold_479_curated_27
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22586..23443)
DNA (858bp) protein (286aa)
ABC-type sugar transport system, permease component n=1 Tax=Polaromonas sp. CF318 RepID=J2LG07_9BURK
ABC transporter permease {ECO:0000313|EMBL:EWY39625.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein
scnpilot_solids2_trim150_scaffold_479_curated_28
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23440..24372)
DNA (933bp) protein (311aa)
Putative ABC transporter permease protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S3P7_9BRAD
Putative ABC transporter permease protein {ECO:0000313|EMBL:CCD88824.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
ABC transporter permease
scnpilot_solids2_trim150_scaffold_479_curated_29
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(24380..25741)
DNA (1362bp) protein (454aa)
Extracellular solute-binding protein n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8FVU4_9CYAN
Extracellular solute-binding protein {ECO:0000313|EMBL:CBN54484.1}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_479_curated_30
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26022..26747
DNA (726bp) protein (242aa)
Transcriptional regulator, GntR family n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CFC4_AGRT5
GntR family transcriptional regulator {ECO:0000313|EMBL:KGM35504.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
GntR family transcriptional regulator
Displaying items 1-30 of 41 in total

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