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scnpilot_solids2_trim150_scaffold_48_curated

Search features with annotation key words

Displaying items 31-60 of 176 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_48_curated_31
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29456..30358
DNA (903bp) protein (301aa)
Probable Oxidoreductase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=Q6W123_RHISN
oxidoreductase
Probable Oxidoreductase {ECO:0000313|EMBL:AAQ87545.1}; Putative oxidoreductase {ECO:0000313|EMBL:ACP22079.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
scnpilot_solids2_trim150_scaffold_48_curated_32
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30445..31455
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPW2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK91252.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_48_curated_33
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31463..32041
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J9A0I2_9RHOB
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
scnpilot_solids2_trim150_scaffold_48_curated_34
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32077..33615
DNA (1539bp) protein (513aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HPW9_9RHIZ
hypothetical protein; K07793 putative tricarboxylic transport membrane protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
scnpilot_solids2_trim150_scaffold_48_curated_35
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33634..34485
DNA (852bp) protein (284aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJ85_9BURK
xylose isomerase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
scnpilot_solids2_trim150_scaffold_48_curated_36
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

34475..35905
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJ86_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
scnpilot_solids2_trim150_scaffold_48_curated_37
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35980..37143
DNA (1164bp) protein (388aa)
Putative dehydrogenase n=1 Tax=Acidovorax sp. CF316 RepID=J0KJQ8_9BURK
Putative dehydrogenase {ECO:0000313|EMBL:EJE51423.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
putative oxidoreductase
scnpilot_solids2_trim150_scaffold_48_curated_38
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37155..38345
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003715487
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS18507.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
scnpilot_solids2_trim150_scaffold_48_curated_39
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38388..39272
DNA (885bp) protein (295aa)
Sugar phosphate isomerase/epimerase n=1 Tax=Polaromonas sp. CF318 RepID=J3D613_9BURK
Sugar phosphate isomerase/epimerase {ECO:0000313|EMBL:EJL85444.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_48_curated_40
unknown

Not on your lists

39472..39864
DNA (393bp) protein (131aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_48_curated_41
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40504..41580
DNA (1077bp) protein (359aa)
Probable oxidoreductase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98HK9_RHILO
oxidoreductase
Probable oxidoreductase {ECO:0000313|EMBL:BAB49857.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
scnpilot_solids2_trim150_scaffold_48_curated_42
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41625..42809)
DNA (1185bp) protein (395aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YDE2_9RHIZ
scnpilot_solids2_trim150_scaffold_48_curated_43
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43077..43352
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000380BABD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESY96182.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
scnpilot_solids2_trim150_scaffold_48_curated_44
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43477..43848)
DNA (372bp) protein (124aa)
UPI0003CEBE97 related cluster n=1 Tax=unknown RepID=UPI0003CEBE97
Flagellar export protein FliJ {ECO:0000313|EMBL:ESW78475.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_48_curated_45
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44329..45024
DNA (696bp) protein (232aa)
Winged helix family two component transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP01_9RHIZ
Winged helix family two component transcriptional regulator {ECO:0000313|EMBL:EHK57529.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
two component transcriptional regulator / cell cycle transcriptional regulator CtrA; K13584 two-component system, cell cycle response regulator CtrA
scnpilot_solids2_trim150_scaffold_48_curated_46
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45135..45503)
DNA (369bp) protein (123aa)
Two-component response regulator n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98HL7_RHILO
two-component response regulator; K03413 two-component system, chemotaxis family, response regulator CheY
Two-component response regulator {ECO:0000313|EMBL:BAB49849.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
scnpilot_solids2_trim150_scaffold_48_curated_47
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45694..45975)
DNA (282bp) protein (94aa)
XRE family transcriptional regulator n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028938E8
Xre family transcriptional regulator {ECO:0000313|EMBL:CDX60979.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
XRE family transcriptional regulator
scnpilot_solids2_trim150_scaffold_48_curated_48
Streptomyces sp. 150FB, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(46385..46963)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI0003651DF4
Uncharacterized protein {ECO:0000313|EMBL:KIF77877.1}; TaxID=1576605 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 150FB.;"
scnpilot_solids2_trim150_scaffold_48_curated_49
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47111..47746)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TH23_MESCW
Histidine phosphotransferase {ECO:0000313|EMBL:EXL04460.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein; K13588 histidine phosphotransferase ChpT
scnpilot_solids2_trim150_scaffold_48_curated_50
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48051..48635
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PRI6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF43652.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_48_curated_51
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48748..49941
DNA (1194bp) protein (398aa)
UPI0003CF19AF related cluster n=1 Tax=unknown RepID=UPI0003CF19AF
Uncharacterized protein {ECO:0000313|EMBL:ESY38414.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_48_curated_52
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49943..51067)
DNA (1125bp) protein (375aa)
UPI0003CF6FB9 related cluster n=1 Tax=unknown RepID=UPI0003CF6FB9
Membrane protein {ECO:0000313|EMBL:ESW78431.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_48_curated_53
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51326..52273
DNA (948bp) protein (316aa)
Choline ABC transporter, periplasmic binding protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TI11_MESCW
Glycine/betaine ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGF69830.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
choline ABC transporter periplasmic binding protein; K02002 glycine betaine/proline transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_48_curated_54
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52554..53402
DNA (849bp) protein (283aa)
opuAB; glycine/betaine/proline ABC transporter membrane protein (EC:3.6.3.32); K02001 glycine betaine/proline transport system permease protein
ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D5D3D7
ABC transporter permease {ECO:0000313|EMBL:EZQ14149.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
scnpilot_solids2_trim150_scaffold_48_curated_55
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53399..54580
DNA (1182bp) protein (394aa)
Choline ABC transporter, ATP-binding protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KGY3_MESAW
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EZQ14150.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
choline ABC transporter, ATP-binding protein
scnpilot_solids2_trim150_scaffold_48_curated_56
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54729..55490
DNA (762bp) protein (254aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M5N1_9RHIZ
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EKF17451.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
short-chain dehydrogenase/reductase SDR
scnpilot_solids2_trim150_scaffold_48_curated_57
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55497..56675
DNA (1179bp) protein (393aa)
L-carnitine dehydratase/bile acid-inducible protein F; K01796 alpha-methylacyl-CoA racemase [EC:5.1.99.4]
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP09_9RHIZ
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:EHK57537.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
scnpilot_solids2_trim150_scaffold_48_curated_58
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56694..57467
DNA (774bp) protein (258aa)
Pyridoxamine 5'-phosphate oxidase-like FMN-binding protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP08_9RHIZ
Pyridoxamine 5'-phosphate oxidase-like FMN-binding protein {ECO:0000313|EMBL:EHK57536.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein; K07226 hypothetical protein
scnpilot_solids2_trim150_scaffold_48_curated_59
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57630..57983
DNA (354bp) protein (118aa)
Putative DNA-binding transcriptional regulator n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FIJ6_9RHIZ
Putative DNA-binding transcriptional regulator {ECO:0000313|EMBL:CCV15943.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
ArsR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_48_curated_60
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58254..59102
DNA (849bp) protein (283aa)
tRNA/rRNA methyltransferase SpoU; K00599 [EC:2.1.1.-]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D548FB
RNA methyltransferase {ECO:0000313|EMBL:ESW78469.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
Displaying items 31-60 of 176 in total

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