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scnpilot_solids2_trim150_scaffold_1704_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1704_curated_1
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..319
DNA (318bp) protein (106aa)
ABC transporter (Fragment) n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YZY4_9PROT
ABC transporter {ECO:0000313|EMBL:GAN79766.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
potA; spermidine/putrescine transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_1704_curated_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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316..1251
DNA (936bp) protein (312aa)
ABC-type spermidine/putrescine transport system, permease component I n=1 Tax=Microvirga sp. WSM3557 RepID=I4YL48_9RHIZ
ABC-type spermidine/putrescine transport system, permease component I {ECO:0000313|EMBL:EIM24690.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
binding-protein-dependent transporters inner membrane component
scnpilot_solids2_trim150_scaffold_1704_curated_3
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1256..2098
DNA (843bp) protein (281aa)
ABC transporter permease protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8II07_AZOC5
ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein
ABC transporter permease protein {ECO:0000313|EMBL:BAF89344.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
scnpilot_solids2_trim150_scaffold_1704_curated_4
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2163..2456)
DNA (294bp) protein (98aa)
Bradyrhizobium elkanii strain UASWS1015 Contig181, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46958.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
scnpilot_solids2_trim150_scaffold_1704_curated_5
unknown

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comp(2547..2858)
DNA (312bp) protein (104aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1704_curated_6
unknown

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3009..3194
DNA (186bp) protein (62aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1704_curated_7
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3236..4105)
DNA (870bp) protein (290aa)
IclR family transcriptional regulator n=1 Tax=Pseudomonas putida CSV86 RepID=L1LSS6_PSEPU
IclR family transcriptional regulator {ECO:0000313|EMBL:EKX82002.1}; TaxID=1005395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida CSV86.;"
IclR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_1704_curated_8
Loktanella vestfoldensis, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4197..6311
DNA (2115bp) protein (705aa)
5-oxoprolinase; K01473 N-methylhydantoinase A [EC:3.5.2.14]
methylhydantoinase n=1 Tax=Loktanella vestfoldensis RepID=UPI000365900C
Hydantoin utilization protein {ECO:0000313|EMBL:EAQ07985.1}; TaxID=314232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella vestfoldensis SKA53.;"
scnpilot_solids2_trim150_scaffold_1704_curated_9
Litoreibacter arenae, Litoreibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6314..7999
DNA (1686bp) protein (562aa)
N-methylhydantoinase B {ECO:0000313|EMBL:EPX80996.1}; EC=3.5.2.14 {ECO:0000313|EMBL:EPX80996.1};; TaxID=1123360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Litoreibacter.;" source="Litoreibacter arenae DSM 19593.;"
N-methylhydantoinase B n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QHR3_9RHOB
hydantoinase B/oxoprolinase family protein
scnpilot_solids2_trim150_scaffold_1704_curated_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8107..9096
DNA (990bp) protein (330aa)
Family 7 extracellular solute-binding protein n=1 Tax=Nitratireductor indicus C115 RepID=K2MY56_9RHIZ
Family 7 extracellular solute-binding protein {ECO:0000313|EMBL:EKF40138.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1704_curated_11
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9155..9673
DNA (519bp) protein (173aa)
Tripartite ATP-independent periplasmic transporter subunit DctQ n=1 Tax=Nitratireductor indicus C115 RepID=K2NQN5_9RHIZ
Tripartite ATP-independent periplasmic transporter subunit DctQ {ECO:0000313|EMBL:EKF40139.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1704_curated_12
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9686..10990
DNA (1305bp) protein (435aa)
TRAP dicarboxylate transporter subunit DctM n=1 Tax=Nitratireductor indicus C115 RepID=K2NL43_9RHIZ
TRAP dicarboxylate transporter subunit DctM {ECO:0000313|EMBL:EKF40140.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
DctM (C4-dicarboxylate permease, large subunit)
scnpilot_solids2_trim150_scaffold_1704_curated_13
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11052..11768)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036F23E8
binding-protein-dependent transport system inner membrane protein; K05846 osmoprotectant transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACK51075.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
scnpilot_solids2_trim150_scaffold_1704_curated_14
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11765..12703)
DNA (939bp) protein (313aa)
ABC transporter related protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TL65_TISMK
yehX; ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:AFK53503.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_solids2_trim150_scaffold_1704_curated_15
Gammaproteobacteria bacterium MFB021, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12700..13605)
DNA (906bp) protein (302aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TL66_TISMK
ABC transporter permease {ECO:0000313|EMBL:KFF48052.1}; TaxID=1492922 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MFB021.;"
yehY; binding-protein-dependent transport system inner membrane protein
Displaying 15 items

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