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scnpilot_solids2_trim150_scaffold_1108_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1108_curated_1
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..499)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI000369D146
Methanol dehydrogenase {ECO:0000313|EMBL:ETR75153.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein; K08988 putative membrane protein
scnpilot_solids2_trim150_scaffold_1108_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(500..1327)
DNA (828bp) protein (276aa)
methanol dehydrogenase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000344DA7F
Uncharacterized protein {ECO:0000313|EMBL:KFC62917.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K06872 uncharacterized protein
scnpilot_solids2_trim150_scaffold_1108_curated_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1335..1928)
DNA (594bp) protein (198aa)
LemA family lipoprotein n=1 Tax=Methylocystis rosea RepID=UPI00035E0CBF
LemA family lipoprotein {ECO:0000313|EMBL:ETR75154.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
LemA family protein
scnpilot_solids2_trim150_scaffold_1108_curated_4
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1989..3815)
DNA (1827bp) protein (609aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltransferase {ECO:0000313|EMBL:ACL59353.1}; EC=2.3.2.2 {ECO:0000313|EMBL:ACL59353.1};; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Gamma-glutamyltransferase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IBU9_METNO
scnpilot_solids2_trim150_scaffold_1108_curated_5
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3913..4590
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D6FA54
Threonine transporter RhtB {ECO:0000313|EMBL:KFG70676.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
lysine exporter protein LysE/YggA
scnpilot_solids2_trim150_scaffold_1108_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4735..5199)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMX0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC62914.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_1108_curated_7
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5196..6407)
DNA (1212bp) protein (404aa)
radical SAM enzyme, Cfr family; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Dual-specificity RNA methyltransferase RlmN {ECO:0000255|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000255|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; TaxID=4
50S rRNA methyltransferase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034B2E03
scnpilot_solids2_trim150_scaffold_1108_curated_8
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6477..7103)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000369143B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50196.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
scnpilot_solids2_trim150_scaffold_1108_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7252..7632)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMW2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC62910.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1108_curated_10
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7800..8585
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMW1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM25303.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
short-chain dehydrogenase/reductase SDR
scnpilot_solids2_trim150_scaffold_1108_curated_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8721..9014)
DNA (294bp) protein (98aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
transcriptional coactivator/pterin dehydratase; K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V186_9BRAD
scnpilot_solids2_trim150_scaffold_1108_curated_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9020..9592)
DNA (573bp) protein (191aa)
2',5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-]
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
2',5' RNA ligase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQR0_NITHX
scnpilot_solids2_trim150_scaffold_1108_curated_13
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9680..10369)
DNA (690bp) protein (230aa)
Lipolytic protein G-D-S-L family n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8THY0_MESCW
G-D-S-L family lipolytic protein
Acyl-CoA thioesterase {ECO:0000313|EMBL:AJY44896.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
scnpilot_solids2_trim150_scaffold_1108_curated_14
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10395..11117
DNA (723bp) protein (241aa)
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMU6_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFG70663.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_1108_curated_15
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11114..13699
DNA (2586bp) protein (862aa)
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMU7_9RHIZ
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component {ECO:0000313|EMBL:EIM25289.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein; K02004 putative ABC transport system permease protein
scnpilot_solids2_trim150_scaffold_1108_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13901..14635
DNA (735bp) protein (245aa)
membrane protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00036B299A
Uncharacterized protein {ECO:0000313|EMBL:KFC68125.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K06890
scnpilot_solids2_trim150_scaffold_1108_curated_17
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14945..15184)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7XUR9_9RHIZ
Protein of unassigned function {ECO:0000313|EMBL:AIQ88998.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1108_curated_18
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15263..16006
DNA (744bp) protein (248aa)
pseudouridine synthase; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
Pseudouridine synthase n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZDT3_METPB
Pseudouridine synthase {ECO:0000313|EMBL:ACB80999.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
scnpilot_solids2_trim150_scaffold_1108_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16003..17331
DNA (1329bp) protein (443aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000313|EMBL:KFC63440.1}; EC=2.1.1.- {ECO:0000313|EMBL:KFC63440.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
tRNA and rRNA cytosine-C5-methylase; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
Ribosomal RNA small subunit methyltransferase RsmB n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMM4_9RHIZ
scnpilot_solids2_trim150_scaffold_1108_curated_20
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17447..19174
DNA (1728bp) protein (576aa)
Heparinase II/III family protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ESQ3_METSB
heparinase II/III family protein
Heparinase II/III family protein {ECO:0000313|EMBL:ACK50388.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
scnpilot_solids2_trim150_scaffold_1108_curated_21
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19243..19476
DNA (234bp) protein (78aa)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LFT5_9RHIZ
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
Displaying 21 items

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