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solids_Rhizobiales_2

SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_1
In projects: scnpilot_solids_dereplicated  |  SCNPILOT_SOLID2_TRIM150

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID2_TRIM150_UNK Manually curated genome

Properties

Avg. coverage: 1.00 Longest contig: 56.04 Kbp Bin length: 2.69 Mbp GC content: 66.69 %
Contigs count: 167 Features count: 2701 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 19 / 55 MC: 1 BSCG 19 / 51 ASCG 9 / 38 MC: 1
Displaying items 51-100 of 167 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids2_trim150_scaffold_3367_curated
Class: Alphaproteobacteria (69.23%)
13 12259 bp 64.83 1.00 92.23
scnpilot_solids2_trim150_scaffold_1232_curated
Order: Rhizobiales (57.14%)
21 18067 bp 67.92 1.00 92.22
scnpilot_solids2_trim150_scaffold_1548_curated
Order: Rhizobiales (86.67%)
15 14881 bp 67.67 1.00 92.15
scnpilot_solids2_trim150_scaffold_768_curated
Order: Rhizobiales (81.82%)
22 25945 bp 67.45 1.00 92.14
scnpilot_solids2_trim150_scaffold_751_curated
Class: Alphaproteobacteria (65.52%)
29 29449 bp 66.87 1.00 92.14
scnpilot_solids2_trim150_scaffold_2052_curated
Order: Rhizobiales (87.5%)
8 11618 bp 67.55 1.00 92.13
scnpilot_solids2_trim150_scaffold_1521_curated
Order: Rhizobiales (80%)
15 15055 bp 68.10 1.00 92.04
scnpilot_solids2_trim150_scaffold_848_curated
Order: Rhizobiales (81.82%)
22 24498 bp 67.30 1.00 92.02
scnpilot_solids2_trim150_scaffold_708_curated
Order: Rhizobiales (88.89%)
27 27394 bp 68.05 1.00 91.87
scnpilot_solids2_trim150_scaffold_1882_curated
Order: Rhizobiales (80%)
15 12429 bp 64.85 1.00 91.87
scnpilot_solids2_trim150_scaffold_2177_curated
Order: Rhizobiales (62.5%)
8 10969 bp 67.12 1.00 91.79
scnpilot_solids2_trim150_scaffold_455_curated
Order: Rhizobiales (76.47%)
34 39830 bp 67.82 1.00 91.75
scnpilot_solids2_trim150_scaffold_1798_curated
Class: Alphaproteobacteria (68.75%)
16 12841 bp 68.54 1.00 91.75
scnpilot_solids2_trim150_scaffold_1905_curated
Order: Rhizobiales (91.67%)
12 11983 bp 67.86 1.00 91.65
scnpilot_solids2_trim150_scaffold_893_curated
Order: Rhizobiales (75%)
16 23146 bp 67.49 1.00 91.61
scnpilot_solids2_trim150_scaffold_3603_curated
Order: Rhizobiales (100%)
5 6530 bp 67.57 1.00 91.56
scnpilot_solids2_trim150_scaffold_2179_curated
Order: Rhizobiales (85.71%)
7 10977 bp 66.60 1.00 91.39
scnpilot_solids2_trim150_scaffold_3304_curated
Order: Rhizobiales (75%)
8 7248 bp 67.80 1.00 91.35
scnpilot_solids2_trim150_scaffold_1713_curated
Order: Rhizobiales (72.73%)
11 13354 bp 67.20 1.00 91.34
scnpilot_solids2_trim150_scaffold_1726_curated
Order: Rhizobiales (71.43%)
14 13481 bp 66.58 1.00 91.33
scnpilot_solids2_trim150_scaffold_1778_curated
Class: Alphaproteobacteria (65.38%)
26 30207 bp 65.24 1.00 91.32
scnpilot_solids2_trim150_scaffold_2925_curated
Order: Rhizobiales (100%)
9 8182 bp 66.32 1.00 91.30
scnpilot_solids2_trim150_scaffold_1108_curated
Order: Rhizobiales (100%)
21 19478 bp 68.76 1.00 91.24
scnpilot_solids2_trim150_scaffold_351_curated
Class: Alphaproteobacteria (61.54%)
52 48171 bp 65.99 1.00 91.22
scnpilot_solids2_trim150_scaffold_464_curated
Order: Rhizobiales (52.5%)
40 39251 bp 66.20 1.00 91.13
scnpilot_solids2_trim150_scaffold_1251_curated
Order: Rhizobiales (75%)
16 17838 bp 67.98 1.00 91.10
scnpilot_solids2_trim150_scaffold_2432_curated
Order: Rhizobiales (70%)
10 9860 bp 66.92 1.00 91.03
scnpilot_solids2_trim150_scaffold_2174_curated
Order: Rhizobiales (87.5%)
16 12331 bp 67.24 1.00 90.99
scnpilot_solids2_trim150_scaffold_3788_curated
Order: Rhizobiales (75%)
8 6154 bp 66.85 1.00 90.97
scnpilot_solids2_trim150_scaffold_1769_curated
Order: Rhizobiales (78.57%)
14 13088 bp 67.55 1.00 90.95
scnpilot_solids2_trim150_scaffold_670_curated
Order: Rhizobiales (75%)
32 29599 bp 65.61 1.00 90.78
scnpilot_solids2_trim150_scaffold_2347_curated
Order: Rhizobiales (90.91%)
11 10217 bp 66.64 1.00 90.76
scnpilot_solids2_trim150_scaffold_2721_curated
Order: Rhizobiales (62.5%)
8 8729 bp 66.06 1.00 90.70
scnpilot_solids2_trim150_scaffold_4465_curated
Order: Rhizobiales (100%)
5 4824 bp 67.68 1.00 90.61
scnpilot_solids2_trim150_scaffold_1901_curated
Order: Rhizobiales (75%)
12 12352 bp 66.93 1.00 90.52
scnpilot_solids2_trim150_scaffold_3268_curated
Order: Rhizobiales (66.67%)
6 7355 bp 67.38 1.00 90.43
scnpilot_solids2_trim150_scaffold_2884_curated
Order: Rhizobiales (77.78%)
9 8306 bp 67.70 1.00 90.40
scnpilot_solids2_trim150_scaffold_3855_curated
Order: Rhizobiales (62.5%)
8 5919 bp 67.16 1.00 90.27
scnpilot_solids2_trim150_scaffold_332_curated
Order: Rhizobiales (53.33%)
45 50070 bp 65.26 1.00 90.21
scnpilot_solids2_trim150_scaffold_791_curated
Order: Rhizobiales (65.52%)
29 25759 bp 68.61 1.00 90.11
scnpilot_solids2_trim150_scaffold_2330_curated
Order: Rhizobiales (70%)
10 10261 bp 67.97 1.00 90.11
scnpilot_solids2_trim150_scaffold_686_curated
Order: Rhizobiales (72%)
25 30216 bp 66.37 1.00 90.10
scnpilot_solids2_trim150_scaffold_1366_curated
Order: Rhizobiales (75%)
20 16487 bp 65.69 1.00 90.05
scnpilot_solids2_trim150_scaffold_960_curated
Order: Rhizobiales (76.19%)
21 22401 bp 66.20 1.00 90.05
scnpilot_solids2_trim150_scaffold_3009_curated
Order: Rhizobiales (85.71%)
7 7949 bp 66.44 1.00 90.05
scnpilot_solids2_trim150_scaffold_1641_curated
Order: Rhizobiales (88.24%)
17 14246 bp 66.65 1.00 89.92
scnpilot_solids2_trim150_scaffold_4076_curated
Order: Rhizobiales (83.33%)
6 5630 bp 67.78 1.00 89.89
scnpilot_solids2_trim150_scaffold_1843_curated
Order: Rhizobiales (50%)
12 12567 bp 65.42 1.00 89.88
scnpilot_solids2_trim150_scaffold_1050_curated
Order: Rhizobiales (75%)
20 20521 bp 67.19 1.00 89.70
scnpilot_solids2_trim150_scaffold_2338_curated
Order: Rhizobiales (92.31%)
13 10142 bp 65.71 1.00 89.57
Displaying items 51-100 of 167 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.