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scnpilot_solids2_trim150_scaffold_2868_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2868_curated_1

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2..838
DNA (837bp) protein (279aa)
Transposase IS4 family protein n=2 Tax=Rhodanobacter RepID=I4WGH0_9GAMM
Transposase IS4 family protein {ECO:0000313|EMBL:EQD26326.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transposase IS4
scnpilot_solids2_trim150_scaffold_2868_curated_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1205..2125
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX24_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91765.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_2868_curated_3
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2238..2750)
DNA (513bp) protein (171aa)
UPI0003CF4C70 related cluster n=1 Tax=unknown RepID=UPI0003CF4C70
Putative membrane protein {ECO:0000313|EMBL:AJZ63960.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2868_curated_4
Burkholderia dolosa, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2856..3791
DNA (936bp) protein (312aa)
LysR family transcriptional regulator (EC:4.2.1.1)
Transcriptional regulator n=1 Tax=Burkholderia dolosa AUO158 RepID=A2WC18_9BURK
Bacterial regulatory helix-turn-helix, lysR family protein {ECO:0000313|EMBL:AJY11842.1}; Transcriptional regulator {ECO:0000313|EMBL:EAY69514.1}; TaxID=350701 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia dolosa AU0158.;"
scnpilot_solids2_trim150_scaffold_2868_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3905..4843)
DNA (939bp) protein (313aa)
cysteine synthase (EC:2.5.1.47)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Cysteine synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVD3_9GAMM
scnpilot_solids2_trim150_scaffold_2868_curated_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4923..6389)
DNA (1467bp) protein (489aa)
precorrin-2 dehydrogenase (EC:1.3.1.76 2.1.1.107)
Siroheme synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVD4_9GAMM
Siroheme synthase {ECO:0000256|HAMAP-Rule:MF_01646}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2868_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6680..7675
DNA (996bp) protein (332aa)
Transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=M4NF61_9GAMM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGG88647.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2868_curated_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7775..10195
DNA (2421bp) protein (807aa)
Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z3_9GAMM
Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster {ECO:0000313|EMBL:EIL95234.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
lhr; putative helicase; K06877 DEAD/DEAH box helicase domain-containing protein
scnpilot_solids2_trim150_scaffold_2868_curated_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10384..11163
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTA8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90449.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative exonuclease; K07502 hypothetical protein
scnpilot_solids2_trim150_scaffold_2868_curated_10
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11191..11529
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI000362D475
Uncharacterized protein {ECO:0000313|EMBL:KGF83322.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2868_curated_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11644..12132)
DNA (489bp) protein (163aa)
Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen n=1 Tax=Rhodanobacter denitrificans RepID=I4WXM4_9GAMM
Peroxiredoxin
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2868_curated_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12207..13256)
DNA (1050bp) protein (350aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W464_9GAMM
scnpilot_solids2_trim150_scaffold_2868_curated_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13246..14031)
DNA (786bp) protein (262aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W465_9GAMM
dihydroorotate dehydrogenase, subfamily 2
Displaying 13 items

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