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scnpilot_solids2_trim150_scaffold_109_curated

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_109_curated_1
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2..865)
DNA (864bp) protein (288aa)
glycosyl transferase family protein; K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
Glycosyl transferase, group 2 family protein n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6H028_FLAPJ
Glycosyl transferase family 2 {ECO:0000313|EMBL:KIA94786.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
scnpilot_solids2_trim150_scaffold_109_curated_2
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1168..2181)
DNA (1014bp) protein (338aa)
Periplasmic component of the Tol biopolymer transport system n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KR57_SOLCM
periplasmic component of the Tol biopolymer transport system
Periplasmic component of the Tol biopolymer transport system {ECO:0000313|EMBL:AFD07263.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_solids2_trim150_scaffold_109_curated_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2340..3320)
DNA (981bp) protein (327aa)
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037F2C86
scnpilot_solids2_trim150_scaffold_109_curated_4
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3579..4691)
DNA (1113bp) protein (371aa)
Aminopeptidase C (Bleomycin hydrolase) n=1 Tax=Pedobacter sp. BAL39 RepID=A6EGZ3_9SPHI
Aminopeptidase C (Bleomycin hydrolase) {ECO:0000313|EMBL:EDM35305.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
peptidase C1B bleomycin hydrolase
scnpilot_solids2_trim150_scaffold_109_curated_5
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4704..5675)
DNA (972bp) protein (324aa)
Peptidoglycan-binding lysin domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL02_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC93171.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
peptidoglycan-binding lysin domain-containing protein
scnpilot_solids2_trim150_scaffold_109_curated_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5687..7072)
DNA (1386bp) protein (462aa)
Fmu (Sun) domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKY2_CHIPD
Fmu (Sun) domain-containing protein
Fmu (Sun) domain protein {ECO:0000313|EMBL:ACU63892.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_109_curated_7
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7154..8113
DNA (960bp) protein (320aa)
alpha/beta hydrolase fold protein; K01259 proline iminopeptidase [EC:3.4.11.5]
Alpha/beta hydrolase fold containing protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y5D2_9SPHI
Alpha/beta hydrolase fold containing protein {ECO:0000313|EMBL:EHQ28943.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
scnpilot_solids2_trim150_scaffold_109_curated_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8115..9524)
DNA (1410bp) protein (470aa)
NAD(P)(+) transhydrogenase; K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2]
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL06_NIAKG
scnpilot_solids2_trim150_scaffold_109_curated_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9555..9872)
DNA (318bp) protein (106aa)
pyridine nucleotide transhydrogenase subunit alpha; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
Pyridine nucleotide transhydrogenase subunit alpha n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL07_NIAKG
Pyridine nucleotide transhydrogenase subunit alpha {ECO:0000313|EMBL:AEW00846.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_109_curated_10

Not on your lists

comp(9889..11010)
DNA (1122bp) protein (374aa)
NAD(P)(+) transhydrogenase; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
NAD(P)(+) transhydrogenase (AB-specific) n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL08_NIAKG
Alanine dehydrogenase/PNT, C-terminal domain protein {ECO:0000313|EMBL:AIA16658.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
scnpilot_solids2_trim150_scaffold_109_curated_11
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11227..11961)
DNA (735bp) protein (245aa)
pseudouridine synthase; K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
Pseudouridine synthase n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KYY6_HALH1
scnpilot_solids2_trim150_scaffold_109_curated_12

Not on your lists

comp(12049..12846)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000382BA3D
Methyltransferase domain protein {ECO:0000313|EMBL:AIA13261.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
O-methyltransferase-like protein
scnpilot_solids2_trim150_scaffold_109_curated_13
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12891..13916)
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000374BFB0
Uncharacterized protein {ECO:0000313|EMBL:KIC94909.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_109_curated_14
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(13978..15681)
DNA (1704bp) protein (568aa)
Amino acid permease-associated region n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KRR0_HALH1
Amino acid transporter {ECO:0000313|EMBL:KIF34182.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
amino acid permease
scnpilot_solids2_trim150_scaffold_109_curated_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15761..16726)
DNA (966bp) protein (322aa)
geranyltranstransferase; K13789 geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000364E7C3
Polyprenyl synthetase {ECO:0000313|EMBL:KIC90047.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
scnpilot_solids2_trim150_scaffold_109_curated_16
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16730..18745)
DNA (2016bp) protein (672aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
ribonuclease R; K12573 ribonuclease R [EC:3.1.-.-]
Ribonuclease R n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF88_NIAKG
scnpilot_solids2_trim150_scaffold_109_curated_17
unknown

Not on your lists

comp(18853..19290)
DNA (438bp) protein (146aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_109_curated_18
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19379..20029
DNA (651bp) protein (217aa)
Rhomboid family protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JT37_9BACT
Rhomboid family protein {ECO:0000313|EMBL:ELR71363.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
rhomboid family protein
scnpilot_solids2_trim150_scaffold_109_curated_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20037..21383)
DNA (1347bp) protein (449aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035C98D7
scnpilot_solids2_trim150_scaffold_109_curated_20
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21402..21719)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PB85_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU61223.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_109_curated_21
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21831..22574
DNA (744bp) protein (248aa)
Electron transfer flavoprotein beta subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDG5_NIAKG
Electron transfer flavoprotein subunit alpha {ECO:0000313|EMBL:KIC91641.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit
scnpilot_solids2_trim150_scaffold_109_curated_22
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22612..23577
DNA (966bp) protein (322aa)
Electron transfer flavoprotein alpha subunit apoprotein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDG6_NIAKG
Electron transfer flavoprotein subunit alpha {ECO:0000313|EMBL:KIC91640.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
electron transfer flavoprotein alpha subunit apoprotein; K03522 electron transfer flavoprotein alpha subunit
scnpilot_solids2_trim150_scaffold_109_curated_23
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23678..24772)
DNA (1095bp) protein (365aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Niabella soli DSM 19437 RepID=H1NSS9_9SPHI
Putative thiol-disulfide oxidoreductase {ECO:0000313|EMBL:GAO43487.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
alkyl hydroperoxide reductase
scnpilot_solids2_trim150_scaffold_109_curated_24
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24977..25615
DNA (639bp) protein (213aa)
Putative NADH-flavin reductase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KRR0_SOLCM
Uncharacterized protein {ECO:0000313|EMBL:KIC91500.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
putative NADH-flavin reductase
scnpilot_solids2_trim150_scaffold_109_curated_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25680..26099
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000382A6A0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97935.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_109_curated_26
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(26125..26427)
DNA (303bp) protein (101aa)
YHS domain-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7Q2_NIAKG
YHS domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_109_curated_27
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26518..27858)
DNA (1341bp) protein (447aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036EFD2A
PKD domain-containing protein
PKD domain containing protein {ECO:0000313|EMBL:ACU61176.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_109_curated_28
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28109..28561)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL69_NIAKG
hypothetical protein
Tax=GWB2_Bacteroidetes_41_8_curated
scnpilot_solids2_trim150_scaffold_109_curated_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28657..30264)
DNA (1608bp) protein (536aa)
peptide chain release factor 3 n=1 Tax=Segetibacter koreensis RepID=UPI00036D79B0
peptide chain release factor 3 (bRF-3); K02837 peptide chain release factor 3
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_109_curated_30
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

30362..31603
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003745806
hypothetical protein; K02004 putative ABC transport system permease protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying items 1-30 of 99 in total

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