ggKbase home page

scnpilot_solids2_trim150_scaffold_566_curated

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_566_curated_1
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(234..731)
DNA (498bp) protein (166aa)
OHCU decarboxylase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y7X2_9SPHI
OHCU decarboxylase {ECO:0000313|EMBL:EHQ30458.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
OHCU decarboxylase
scnpilot_solids2_trim150_scaffold_566_curated_2
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(752..1981)
DNA (1230bp) protein (410aa)
amidase; K02083 allantoate deiminase [EC:3.5.3.9]
Amidase, hydantoinase/carbamoylase family n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y7X4_9SPHI
Amidase, hydantoinase/carbamoylase family {ECO:0000313|EMBL:EHQ30460.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
scnpilot_solids2_trim150_scaffold_566_curated_3
Chryseobacterium jeonii, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2190..3290)
DNA (1101bp) protein (367aa)
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670};; TaxID=266749 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium jeonii.;"
talA; transaldolase (EC:5.3.1.9)
Transaldolase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YDM1_9SPHI
scnpilot_solids2_trim150_scaffold_566_curated_4
BJP_08E140C01_Flavobacteriales_35_8, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3322..3672)
DNA (351bp) protein (117aa)
Alkylhydroperoxidase AhpD family core domain protein n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YRN8_AEQSU
alkylhydroperoxidase
Tax=BJP_08E140C01_Flavobacteriales_35_8
scnpilot_solids2_trim150_scaffold_566_curated_5
BJP_08E140C01_Flavobacteriales_35_8, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3697..6477)
DNA (2781bp) protein (927aa)
aconitase (EC:4.2.1.3)
Aconitate hydratase 1 n=1 Tax=Bizionia argentinensis JUB59 RepID=G2EAN9_9FLAO
Tax=BJP_08E140C01_Flavobacteriales_35_8
scnpilot_solids2_trim150_scaffold_566_curated_6
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6583..7050)
DNA (468bp) protein (156aa)
Probable universal stress protein id=3901618 bin=GWF2_Bacteroidetes_35_48 species=Flavobacterium psychrophilum genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
uspA; universal stress protein family protein
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_solids2_trim150_scaffold_566_curated_7
Candidatus Kuenenia stuttgartiensis, Candidatus Kuenenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(7100..9100)
DNA (2001bp) protein (667aa)
Strongly similar to transketolase 1 thiamin-binding isozyme {ECO:0000313|EMBL:CAJ73432.1}; EC=2.2.1.1 {ECO:0000313|EMBL:CAJ73432.1};; TaxID=174633 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Kuenenia.;" source="Candidatus Kuenenia stuttgartiensis.;"
transketolase; K00615 transketolase [EC:2.2.1.1]
Strongly similar to transketolase 1 thiamin-binding isozyme n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q778_9BACT
scnpilot_solids2_trim150_scaffold_566_curated_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9306..11201
DNA (1896bp) protein (632aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000368438D
Chloride channel protein {ECO:0000313|EMBL:AHF16327.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Cl-channel voltage-gated family protein
scnpilot_solids2_trim150_scaffold_566_curated_9
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11204..11659)
DNA (456bp) protein (152aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PCZ0_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:KIC92606.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
BadM/Rrf2 family transcriptional regulator
scnpilot_solids2_trim150_scaffold_566_curated_10
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11728..12411)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036636E8
Uncharacterized protein {ECO:0000313|EMBL:GAO42803.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_566_curated_11
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12413..13918)
DNA (1506bp) protein (502aa)
RNA polymerase, sigma 54 subunit, RpoN/SigL n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB80_NIAKG
RNA polymerase sigma54 factor {ECO:0000313|EMBL:KIC94813.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
RNA polymerase, sigma 54 subunit, RpoN/SigL; K03092 RNA polymerase sigma-54 factor
scnpilot_solids2_trim150_scaffold_566_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14486..15526
DNA (1041bp) protein (347aa)
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
aminomethyltransferase; K00605 aminomethyltransferase [EC:2.1.2.10]
Aminomethyltransferase n=1 Tax=Niabella soli DSM 19437 RepID=H1NTG0_9SPHI
scnpilot_solids2_trim150_scaffold_566_curated_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15552..16295
DNA (744bp) protein (248aa)
2-phosphosulfolactate phosphatase; K05979 2-phosphosulfolactate phosphatase [EC:3.1.3.71]
Probable 2-phosphosulfolactate phosphatase {ECO:0000256|HAMAP-Rule:MF_00490}; EC=3.1.3.71 {ECO:0000256|HAMAP-Rule:MF_00490};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
2-phosphosulfolactate phosphatase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF34_NIAKG
scnpilot_solids2_trim150_scaffold_566_curated_14
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16631..20305
DNA (3675bp) protein (1225aa)
SNF2-related protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF39_NIAKG
Putative ATP-dependent helicase {ECO:0000313|EMBL:GAO42392.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
SNF2-related protein
scnpilot_solids2_trim150_scaffold_566_curated_15
unknown

Not on your lists

comp(20574..20708)
DNA (135bp) protein (45aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_566_curated_16
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

20849..21463
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003692BE9
Uncharacterized protein {ECO:0000313|EMBL:KIF30814.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_566_curated_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21658..22611
DNA (954bp) protein (318aa)
5,10-methylenetetrahydrofolate reductase (NAD(P)); K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20]
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Methylenetetrahydrofolate reductase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8V2_NIAKG
scnpilot_solids2_trim150_scaffold_566_curated_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22625..24538)
DNA (1914bp) protein (638aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8V4_NIAKG
PpiC-type peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:AEW02311.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_566_curated_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24556..25998)
DNA (1443bp) protein (481aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8V5_NIAKG
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:AEW02312.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_566_curated_20
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26153..27526
DNA (1374bp) protein (458aa)
23S rRNA m(5)U-1939 methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7P1_NIAKG
RNA methyltransferase {ECO:0000313|EMBL:KIC91195.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
scnpilot_solids2_trim150_scaffold_566_curated_21
unknown

Not on your lists

27585..28358
DNA (774bp) protein (258aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_566_curated_22
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

28484..29830
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037822AF
hypothetical protein
Tax=BJP_IG2103_Bacteroidetes_41_9
scnpilot_solids2_trim150_scaffold_566_curated_23
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29855..30403)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037177E7
Glycoside hydrolase {ECO:0000313|EMBL:KIC94808.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
lysozyme
scnpilot_solids2_trim150_scaffold_566_curated_24
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(30633..32612)
DNA (1980bp) protein (660aa)
Peptidase M1 membrane alanine aminopeptidase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VXE7_DYAFD
peptidase M1 membrane alanine aminopeptidase
Peptidase M1 membrane alanine aminopeptidase {ECO:0000313|EMBL:ACT93290.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_solids2_trim150_scaffold_566_curated_25
Sulfurihydrogenibium sp. YO3AOP1, Sulfurihydrogenibium, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

32784..33287
DNA (504bp) protein (168aa)
lytic transglycosylase; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-]
Lytic transglycosylase catalytic n=1 Tax=Sulfurihydrogenibium sp. (strain YO3AOP1) RepID=B2V9X8_SULSY
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ACD66751.1}; TaxID=436114 species="Bacteria; Aquificae; Aquificales; Hydrogenothermaceae; Sulfurihydrogenibium.;" source="Sulfurihydrogenibium sp. (strain YO3AOP1).;"
Displaying 25 items

View Taxonomy