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scnpilot_solids2_trim150_scaffold_2960_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2960_curated_1
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

308..553
DNA (246bp) protein (82aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y1S0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:GAO27812.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
scnpilot_solids2_trim150_scaffold_2960_curated_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2149..3606)
DNA (1458bp) protein (486aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNK4_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99921.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_2960_curated_3
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3681..3884
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JKC1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ELR68688.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
XRE family transcriptional regulator
scnpilot_solids2_trim150_scaffold_2960_curated_4
unknown

Not on your lists

comp(3938..4381)
DNA (444bp) protein (148aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2960_curated_5
Weeksella virosa, Weeksella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4378..5340)
DNA (963bp) protein (321aa)
RHS repeat-associated core domain protein n=1 Tax=Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC 16016 / NCTC 11634 / CL345/78) RepID=F0P175_WEEVC
hypothetical protein
RHS repeat-associated core domain protein {ECO:0000313|EMBL:ADX67574.1}; Flags: Precursor;; TaxID=865938 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Weeksella.;" source="Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC; 16016 / NCTC 11634 / CL345/78).;"
scnpilot_solids2_trim150_scaffold_2960_curated_6
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5419..5769)
DNA (351bp) protein (117aa)
Uncharacterized protein {ECO:0000313|EMBL:GAL85779.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
scnpilot_solids2_trim150_scaffold_2960_curated_7
unknown

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5815..5976
DNA (162bp) protein (54aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2960_curated_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6526..7068)
DNA (543bp) protein (181aa)
KilA-N, DNA-binding domain n=1 Tax=Niabella soli DSM 19437 RepID=H1NMH6_9SPHI
DNA-binding protein {ECO:0000313|EMBL:AHF14697.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2960_curated_9
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7158..8015)
DNA (858bp) protein (286aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC89066.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
Integrase family protein id=4690950 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
integrase family protein
scnpilot_solids2_trim150_scaffold_2960_curated_10
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8045..8962)
DNA (918bp) protein (306aa)
Site-specific recombinase XerD n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JKJ9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KIC89067.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
tyrosine recombinase XerD
scnpilot_solids2_trim150_scaffold_2960_curated_11
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9039..11006)
DNA (1968bp) protein (656aa)
DNA primase n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JL19_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KIC89068.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2960_curated_12
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

comp(11082..11516)
DNA (435bp) protein (145aa)
Zinc finger CHC2-family protein id=3891994 bin=GWF2_Bacteroidetes_49_14 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
scnpilot_solids2_trim150_scaffold_2960_curated_13
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11658..11990
DNA (333bp) protein (111aa)
Transcriptional regulator, XRE family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PM08_CHIPD
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACU62222.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_2960_curated_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12236..13966)
DNA (1731bp) protein (577aa)
Uncharacterized protein n=1 Tax=Prevotella bryantii B14 RepID=D8DXF2_PREBR
Uncharacterized protein {ECO:0000313|EMBL:KIC93928.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
RHS repeat-associated core domain-containing protein
scnpilot_solids2_trim150_scaffold_2960_curated_15
unknown

Not on your lists

comp(14109..14324)
DNA (216bp) protein (72aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2960_curated_16
unknown

Not on your lists

comp(14518..14775)
DNA (258bp) protein (86aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2960_curated_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14778..16880)
DNA (2103bp) protein (701aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNK4_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99921.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_2960_curated_18
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(17086..17640)
DNA (555bp) protein (185aa)
Transposase n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RV34_LEAB4
transposase, IS66 family
Transposase {ECO:0000313|EMBL:ADQ17914.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
scnpilot_solids2_trim150_scaffold_2960_curated_19
Psychroflexus torquis, Psychroflexus, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17627..18646)
DNA (1020bp) protein (340aa)
Transposase, IS66 family, Orf3 n=2 Tax=Psychroflexus torquis (strain ATCC 700755 / ACAM 623) RepID=K4IHR1_PSYTT
transposase, IS66 family, Orf3
Transposase, IS66 family, Orf3 {ECO:0000313|EMBL:AFU68596.1}; TaxID=313595 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Psychroflexus.;" source="Psychroflexus torquis (strain ATCC 700755 / ACAM 623).;"
scnpilot_solids2_trim150_scaffold_2960_curated_20
Psychroflexus torquis, Psychroflexus, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18727..19020)
DNA (294bp) protein (98aa)
Transposase, IS66 family n=1 Tax=Psychroflexus torquis (strain ATCC 700755 / ACAM 623) RepID=K4II42_PSYTT
transposase, IS66 family
Transposase, IS66 family {ECO:0000313|EMBL:AFU69526.1}; Transposase, IS66 family, Orf2 {ECO:0000313|EMBL:AFU68597.1}; Transposase, IS66 family, Orf3 {ECO:0000313|EMBL:AFU68756.1}; TaxID=313595 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Psychroflexus.;" source="Psychroflexus torquis (strain ATCC 700755 / ACAM 623).;"
scnpilot_solids2_trim150_scaffold_2960_curated_21
unknown

Not on your lists

comp(19067..19354)
DNA (288bp) protein (96aa)

This feature has no annotations

Displaying 21 items

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