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scnpilot_solids2_trim150_scaffold_1537_curated

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1537_curated_1
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1..567
DNA (567bp) protein (189aa)
exodeoxyribonuclease III Xth; K01142 exodeoxyribonuclease III [EC:3.1.11.2]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000377503A
Exodeoxyribonuclease III {ECO:0000313|EMBL:KIC91251.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
scnpilot_solids2_trim150_scaffold_1537_curated_2
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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571..873
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI00037B3979
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_1537_curated_3
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1129..1398
DNA (270bp) protein (90aa)
Histone family protein DNA-binding protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7J5_NIAKG
Transcriptional regulator HU subunit alpha {ECO:0000313|EMBL:KIC95229.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta
scnpilot_solids2_trim150_scaffold_1537_curated_4
unknown

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1468..1611
DNA (144bp) protein (48aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1537_curated_5
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1613..2260)
DNA (648bp) protein (216aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629, ECO:0000256|SAAS:SAAS00025317};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
pyridoxine/pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5); K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003650F80
scnpilot_solids2_trim150_scaffold_1537_curated_6
unknown

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comp(2368..2871)
DNA (504bp) protein (168aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1537_curated_7
unknown

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2992..3096
DNA (105bp) protein (35aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1537_curated_8
Toxocara canis, Toxocara, Ascaridida, Chromadorea, Nematoda, Metazoa

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comp(3126..3941)
DNA (816bp) protein (272aa)
Trichohyalin, putative n=1 Tax=Entamoeba histolytica RepID=C4MAH4_ENTHI
Thyroid receptor-interacting protein 11 {ECO:0000313|EMBL:KHN81579.1}; TaxID=6265 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Ascaridida; Ascaridoidea; Toxocaridae; Toxocara.;" source="Toxocara canis (Canine roundworm).;"
295.t00001; trichohyalin
scnpilot_solids2_trim150_scaffold_1537_curated_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(4054..4830)
DNA (777bp) protein (259aa)
uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22]
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Uridylate kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7K0_NIAKG
scnpilot_solids2_trim150_scaffold_1537_curated_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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4916..5248
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5ZG57_9PORP
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_1537_curated_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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5326..6306
DNA (981bp) protein (327aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
acetyl-CoA carboxylase subunit alpha n=1 Tax=Segetibacter koreensis RepID=UPI0003723458
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_1537_curated_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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6319..7206
DNA (888bp) protein (296aa)
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7C9_NIAKG
scnpilot_solids2_trim150_scaffold_1537_curated_13
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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7203..8339
DNA (1137bp) protein (379aa)
putative hydrolase of alpha/beta superfamily protein n=1 Tax=Pedobacter agri RepID=UPI00029A1258
Uncharacterized protein {ECO:0000313|EMBL:KIC93007.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
putative hydrolase of alpha/beta superfamily
scnpilot_solids2_trim150_scaffold_1537_curated_14
Formosa sp. AK20, Formosa, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(8380..11685)
DNA (3306bp) protein (1102aa)
Putative cytochrome C-type biogenesis protein n=1 Tax=Formosa sp. AK20 RepID=M7MGV9_9FLAO
Putative cytochrome C-type biogenesis protein {ECO:0000313|EMBL:EMQ95492.1}; TaxID=1137281 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Formosa.;" source="Formosa sp. AK20.;"
cytochrome C biogenesis protein CcsB
scnpilot_solids2_trim150_scaffold_1537_curated_15
Formosa sp. AK20, Formosa, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(11890..13161)
DNA (1272bp) protein (424aa)
Putative lipoprotein n=1 Tax=Formosa sp. AK20 RepID=M7MK76_9FLAO
Putative lipoprotein {ECO:0000313|EMBL:EMQ95491.1}; TaxID=1137281 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Formosa.;" source="Formosa sp. AK20.;"
lipoprotein
scnpilot_solids2_trim150_scaffold_1537_curated_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(13636..16521)
DNA (2886bp) protein (962aa)
Two component regulator three Y domain-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TA27_NIAKG
Two component regulator three Y domain-containing protein
Two component regulator three Y domain-containing protein {ECO:0000313|EMBL:AEW02399.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_1537_curated_17
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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16747..18483
DNA (1737bp) protein (579aa)
Glycoside hydrolase family 5 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PFA3_CHIPD
glycoside hydrolase
Glycoside hydrolase family 5 {ECO:0000313|EMBL:ACU61608.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_1537_curated_18
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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18595..21720
DNA (3126bp) protein (1042aa)
TonB-dependent receptor plug n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TA25_NIAKG
TonB-dependent receptor {ECO:0000313|EMBL:KIA85391.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
TonB-dependent receptor plug
scnpilot_solids2_trim150_scaffold_1537_curated_19
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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21741..23249
DNA (1509bp) protein (503aa)
RagB/SusD domain-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TA24_NIAKG
Carbohydrate-binding protein SusD {ECO:0000313|EMBL:KIA85390.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
RagB/SusD domain-containing protein
scnpilot_solids2_trim150_scaffold_1537_curated_20
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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23262..24362
DNA (1101bp) protein (367aa)
Probable lipoprotein n=1 Tax=Flavobacterium branchiophilum (strain FL-15) RepID=G2Z0J9_FLABF
Uncharacterized protein {ECO:0000313|EMBL:KIA85389.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
putative lipoprotein
scnpilot_solids2_trim150_scaffold_1537_curated_21
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24375..25307
DNA (933bp) protein (311aa)
Probable lipoprotein n=1 Tax=Flavobacterium branchiophilum (strain FL-15) RepID=G2Z0K0_FLABF
Uncharacterized protein {ECO:0000313|EMBL:KIA85388.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
putative lipoprotein
scnpilot_solids2_trim150_scaffold_1537_curated_22
BJP_08E140C01_Flavobacteriales_35_8, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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25387..26580
DNA (1194bp) protein (398aa)
Glycoside hydrolase family 16 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T120_PALPW
glycoside hydrolase family protein
Tax=BJP_08E140C01_Flavobacteriales_35_8
scnpilot_solids2_trim150_scaffold_1537_curated_23
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26595..28043
DNA (1449bp) protein (483aa)
glycoside hydrolase; K01201 glucosylceramidase [EC:3.2.1.45]
Glycoside hydrolase family 30 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNN6_CHIPD
Glycoside hydrolase family 30 {ECO:0000313|EMBL:ACU64136.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Displaying 23 items

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