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scnpilot_solids2_trim150_scaffold_1204_curated

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1204_curated_1
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1061..2308)
DNA (1248bp) protein (416aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
DEAD/DEAH box helicase domain protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GKW5_9BACT
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:CCH54541.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
scnpilot_solids2_trim150_scaffold_1204_curated_2
unknown

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comp(2529..2630)
DNA (102bp) protein (34aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1204_curated_3
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

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2676..5510
DNA (2835bp) protein (945aa)
Isochorismatase hydrolase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q027D1_SOLUE
isochorismatase hydrolase
Tax=GWF2_Verrucomicrobia_62_7_curated
scnpilot_solids2_trim150_scaffold_1204_curated_4
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5542..6003)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SE19_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY52945.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
scnpilot_solids2_trim150_scaffold_1204_curated_5
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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6352..7713
DNA (1362bp) protein (454aa)
glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7]
Glutaryl-CoA dehydrogenase {ECO:0000313|EMBL:ADZ79545.1}; EC=1.3.99.7 {ECO:0000313|EMBL:ADZ79545.1};; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
Glutaryl-CoA dehydrogenase n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C3T5_SPHS2
scnpilot_solids2_trim150_scaffold_1204_curated_6
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(7803..9050)
DNA (1248bp) protein (416aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
DEAD/DEAH box helicase domain protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GKW5_9BACT
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:CCH54541.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
scnpilot_solids2_trim150_scaffold_1204_curated_7
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(9315..10562)
DNA (1248bp) protein (416aa)
MFS transporter n=1 Tax=Spirosoma spitsbergense RepID=UPI000377BE24
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADB38311.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_solids2_trim150_scaffold_1204_curated_8
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(10707..11636)
DNA (930bp) protein (310aa)
Demethylmenaquinone methyltransferase-like protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GTK1_9BACT
Demethylmenaquinone methyltransferase-like protein {ECO:0000313|EMBL:CCH57230.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
demethylmenaquinone methyltransferase
scnpilot_solids2_trim150_scaffold_1204_curated_9

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comp(11665..13461)
DNA (1797bp) protein (599aa)
amidohydrolase; K01465 dihydroorotase [EC:3.5.2.3]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000376942C
Uncharacterized protein {ECO:0000313|EMBL:KKN02904.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
scnpilot_solids2_trim150_scaffold_1204_curated_10

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comp(13524..15197)
DNA (1674bp) protein (558aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000376381A
Uncharacterized protein {ECO:0000313|EMBL:KKN02908.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
NHL repeat containing protein
scnpilot_solids2_trim150_scaffold_1204_curated_11
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(15453..16367)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036C3ECE
Gluconolactonase {ECO:0000313|EMBL:AKD58324.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SMP-30/gluconolaconase/LRE domain-containing protein
scnpilot_solids2_trim150_scaffold_1204_curated_12

Not on your lists

comp(16435..17655)
DNA (1221bp) protein (407aa)
selenocysteine synthase (seryl-tRNASer selenium transferase); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003705987
Uncharacterized protein {ECO:0000313|EMBL:KKN02906.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
scnpilot_solids2_trim150_scaffold_1204_curated_13
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(17688..18158)
DNA (471bp) protein (157aa)
Endoribonuclease L-PSP id=3562306 bin=GWF2_Bacteroidetes_41_9 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
endoribonuclease L-PSP
Tax=GWA2_Bacteroidetes_40_15_curated
Displaying 13 items

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