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SCNpilot_solid_1_scaffold_4

Search features with annotation key words

Displaying items 121-150 of 402 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_4_120
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

132113..132370
DNA (258bp) protein (86aa)
Glutaredoxin 3 n=2 Tax=Alcaligenes RepID=M5J1Y4_9BURK
Glutaredoxin 3
Glutaredoxin 3 {ECO:0000313|EMBL:CDM23137.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans
SCNpilot_solid_1_scaffold_4_121
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

132407..132913
DNA (507bp) protein (169aa)
preprotein translocase subunit SecB n=1 Tax=Pusillimonas noertemannii RepID=UPI00031AB028
Protein export cytoplasm chaperone protein rbh
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellan
SCNpilot_solid_1_scaffold_4_122
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

132987..134021
DNA (1035bp) protein (345aa)
Glycerol-3-phosphate dehydrogenase (EC:1.1.1.94) rbh
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394, ECO:0000313|EMBL:CDM23135.1};; NAD(P)H-dependent glycerol-3-phosphate dehy
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002EF0744 rbh
SCNpilot_solid_1_scaffold_4_123
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(134074..134544)
DNA (471bp) protein (157aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-R
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUC7_PUSST
RNA methyltransferase
SCNpilot_solid_1_scaffold_4_124
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(134606..135382)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUC8_PUSST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM23133.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_4_125
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

135459..136415
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUC9_PUSST rbh
SAM-dependent methyltransferase, BioC-like rbh
SAM-dependent methyltransferase, BioC-like {ECO:0000313|EMBL:CDM23132.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source
SCNpilot_solid_1_scaffold_4_126
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(136445..137767)
DNA (1323bp) protein (441aa)
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUD4_PUSST rbh
Ribosomal protein S12p methylthiotransferase rbh
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
SCNpilot_solid_1_scaffold_4_127
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

137804..139240
DNA (1437bp) protein (479aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752, ECO:0000313|EMBL:CDM23128.1}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1437824 species="Bacteria; Proteobacter
Methyltransferase n=2 Tax=Alcaligenes RepID=U1ZNA2_9BURK rbh
Ribosomal RNA small subunit methyltransferase B rbh
SCNpilot_solid_1_scaffold_4_128
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139388..139954
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUD2_PUSST
Probable proline rich signal peptide protein
Probable proline rich signal peptide protein {ECO:0000313|EMBL:CDM23127.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" sour
SCNpilot_solid_1_scaffold_4_129
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139906..142287
DNA (2382bp) protein (794aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Ca
Putative two-component sensor kinase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUD1_PUSST rbh
Nitrogen regulation protein NtrY rbh
SCNpilot_solid_1_scaffold_4_130
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

142289..142993
DNA (705bp) protein (235aa)
Two-component system response regulator n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUD0_PUSST rbh
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains rbh
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:CDM23125.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
SCNpilot_solid_1_scaffold_4_131
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(143006..143959)
DNA (954bp) protein (318aa)
Methionyl-tRNA formyltransferase (EC:2.1.2.9) rbh
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1437824 species="
Methionyl-tRNA formyltransferase n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QNB3_BORBO rbh
SCNpilot_solid_1_scaffold_4_132
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(143964..144488)
DNA (525bp) protein (175aa)
Peptide deformylase (EC:3.5.1.88) rbh
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
Peptide deformylase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUD7_PUSST rbh
SCNpilot_solid_1_scaffold_4_133
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

144622..145764
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUD8_PUSST rbh
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake rbh
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake {ECO:0000313|EMBL:CDM23122.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcali
SCNpilot_solid_1_scaffold_4_134
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

145883..146785
DNA (903bp) protein (301aa)
Hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4) rbh
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:CDM23121.1}; EC=4.1.3.4 {ECO:0000313|EMBL:CDM23121.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcalige
Hydroxymethylglutaryl-CoA lyase n=37 Tax=Bordetella RepID=F4LBT5_BORPC rbh
SCNpilot_solid_1_scaffold_4_135
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

146930..147358
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUE0_PUSST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM23112.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_4_136
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(147437..148708)
DNA (1272bp) protein (424aa)
Phenylacetate-coenzyme A ligase (EC:6.2.1.30) rbh
Phenylacetate-coenzyme A ligase {ECO:0000313|EMBL:CDM23109.1}; EC=6.2.1.30 {ECO:0000313|EMBL:CDM23109.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcalig
Putative phenylacetate-CoA ligase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IGT5_BORPD rbh
SCNpilot_solid_1_scaffold_4_137
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(148724..149551)
DNA (828bp) protein (276aa)
ABC transporter ATP-binding protein n=1 Tax=Achromobacter xylosoxidans C54 RepID=E5UGE2_ALCXX rbh
Branched-chain amino acid transport ATP-binding protein LivF rbh
Branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CDM23108.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castel
SCNpilot_solid_1_scaffold_4_138
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(149597..150928)
DNA (1332bp) protein (444aa)
Putative branched-chain amino acid transport system substrate-binding protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUF0_PUSST rbh
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein rbh
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein {ECO:0000313|EMBL:CDM23107.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenac
SCNpilot_solid_1_scaffold_4_139
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(151053..152114)
DNA (1062bp) protein (354aa)
Putative branched-chain amino acid transport system permease n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUF1_PUSST rbh
Branched-chain amino acid transport system permease protein LivM rbh
Branched-chain amino acid transport system permease protein LivM {ECO:0000313|EMBL:CDM23106.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Ca
SCNpilot_solid_1_scaffold_4_140
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(152147..153076)
DNA (930bp) protein (310aa)
Putative branched-chain amino acid transport system permease n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUV7_PUSST rbh
High-affinity branched-chain amino acid transport system permease protein LivH rbh
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CDM23105.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alca
SCNpilot_solid_1_scaffold_4_141
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(153086..153919)
DNA (834bp) protein (278aa)
Putative high-affinity branched-chain amino acid transport ATP-binding protein n=7 Tax=Bordetella RepID=K0MQJ2_BORBM rbh
Branched-chain amino acid transport ATP-binding protein LivG rbh
Branched-chain amino acid transport ATP-binding protein LivG {ECO:0000313|EMBL:CDM23104.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castel
SCNpilot_solid_1_scaffold_4_142
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(153920..155881)
DNA (1962bp) protein (654aa)
Long-chain-fatty-acid--CoA ligase (EC:6.2.1.3) rbh
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:CDM23103.1}; EC=6.2.1.3 {ECO:0000313|EMBL:CDM23103.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcali
UPI0003D6007C related cluster n=1 Tax=unknown RepID=UPI0003D6007C rbh
SCNpilot_solid_1_scaffold_4_143
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

156029..156703
DNA (675bp) protein (225aa)
Cyclic nucleotide-binding domain-containing protein 6 n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F2Z6_9BURK rbh
transcriptional regulator, Crp/Fnr family rbh
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:CDM23102.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source=
SCNpilot_solid_1_scaffold_4_144
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(156719..158020)
DNA (1302bp) protein (434aa)
Sulfate adenylyltransferase subunit 1 (EC:2.7.7.4) rbh
Sulfate adenylyltransferase subunit 1 {ECO:0000256|SAAS:SAAS00056000, ECO:0000313|EMBL:CDM23095.1}; EC=2.7.7.4 {ECO:0000256|SAAS:SAAS00055979, ECO:0000313|EMBL:CDM23095.1};; TaxID=1437824 species="Bac
Sulfate adenylyltransferase subunit 1 n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUW2_PUSST rbh
SCNpilot_solid_1_scaffold_4_145
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(158020..158937)
DNA (918bp) protein (306aa)
Sulfate adenylyltransferase subunit 2 (EC:2.7.7.4) rbh
Sulfate adenylyltransferase {ECO:0000256|SAAS:SAAS00055732}; EC=2.7.7.4 {ECO:0000256|SAAS:SAAS00055732, ECO:0000313|EMBL:CDM23094.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacter
sulfate adenylyltransferase subunit 2 n=1 Tax=Pusillimonas noertemannii RepID=UPI0002EFEA91 rbh
SCNpilot_solid_1_scaffold_4_146
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(158934..159650)
DNA (717bp) protein (239aa)
Phosphoadenylyl-sulfate reductase [thioredoxin] / Adenylyl-sulfate reductase [thioredoxin] (EC:1.8.4.10 1.8.4.8) rbh
Phosphoadenylyl-sulfate reductase [thioredoxin] / Adenylyl-sulfate reductase [thioredoxin] {ECO:0000313|EMBL:CDM23093.1}; EC=1.8.4.10 {ECO:0000313|EMBL:CDM23093.1};; EC=1.8.4.8 {ECO:0000313|EMBL:CDM23
Adenosine phosphosulfate reductase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IJM0_BORPD rbh
SCNpilot_solid_1_scaffold_4_147
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

159916..161205
DNA (1290bp) protein (430aa)
NAD-specific glutamate dehydrogenase; NADP-specific glutamate dehydrogenase (EC:1.4.1.2 1.4.1.4) rbh
Glutamate dehydrogenase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9INH5_BORPD rbh
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella
SCNpilot_solid_1_scaffold_4_148
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

161205..162179
DNA (975bp) protein (325aa)
L-asparaginase (EC:3.5.1.1) rbh
L-asparaginase {ECO:0000313|EMBL:CDM23091.1}; EC=3.5.1.1 {ECO:0000313|EMBL:CDM23091.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellan
L-asparagine amidohydrolase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUX5_PUSST
SCNpilot_solid_1_scaffold_4_149
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(162257..163297)
DNA (1041bp) protein (347aa)
L-threonine 3-dehydrogenase (EC:1.1.1.103) rbh
L-threonine 3-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053}; EC=1.1.1.103 {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053};; TaxID=1437824 species="Bac
L-threonine 3-dehydrogenase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUX7_PUSST rbh
Displaying items 121-150 of 402 in total

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