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SCNpilot_solid_1_scaffold_4

Search features with annotation key words

Displaying items 151-180 of 402 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_4_150
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163368..164576)
DNA (1209bp) protein (403aa)
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29) rbh
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985, ECO:0000313|EMBL:CDM23089.1}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_009
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUX8_PUSST rbh
SCNpilot_solid_1_scaffold_4_151
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

164740..167325
DNA (2586bp) protein (862aa)
diguanylate cyclase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000376273B rbh
diguanylate cyclase/phosphodiesterase rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:CDM23087.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Cas
SCNpilot_solid_1_scaffold_4_152
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(167310..168731)
DNA (1422bp) protein (474aa)
MFS transporter n=1 Tax=Variovorax paradoxus RepID=UPI0003641AC7 rbh
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACS21595.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
SCNpilot_solid_1_scaffold_4_153
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

168832..169557
DNA (726bp) protein (242aa)
ArsR family transcriptional regulator n=1 Tax=Ralstonia sp. AU12-08 RepID=S9TBN3_9RALS rbh
ArsR family transcriptional regulator {ECO:0000313|EMBL:KHK57710.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralsto
Transcriptional regulator
SCNpilot_solid_1_scaffold_4_154
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(169626..171371)
DNA (1746bp) protein (582aa)
TRAP transporter, DctM-like membrane protein n=3 Tax=Bordetella RepID=V9CGL5_BORPT rbh
TRAP dicarboxylate transporter, DctM subunit rbh
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:CDM23086.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" sour
SCNpilot_solid_1_scaffold_4_155
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(171374..171985)
DNA (612bp) protein (204aa)
Putative membrane protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IRK4_BORPD
TRAP dicarboxylate transporter, DctQ subunit rbh
TRAP dicarboxylate transporter, DctQ subunit {ECO:0000313|EMBL:CDM23085.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" sour
SCNpilot_solid_1_scaffold_4_156
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(172108..173196)
DNA (1089bp) protein (363aa)
Putative periplasmic solute-binding protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IRK7_BORPD rbh
TRAP transporter solute receptor rbh
TRAP transporter solute receptor {ECO:0000313|EMBL:CDM23084.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castella
SCNpilot_solid_1_scaffold_4_157
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

173455..174648
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D372BD rbh
probable transporter rbh
Probable transporter {ECO:0000313|EMBL:CDM23083.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defra
SCNpilot_solid_1_scaffold_4_158
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

174645..175871
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F5924E rbh
major facilitator superfamily MFS_1 rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CDM23082.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Caste
SCNpilot_solid_1_scaffold_4_159
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(175875..177095)
DNA (1221bp) protein (407aa)
Metal dependent phosphohydrolase n=1 Tax=Pseudomonas psychrotolerans L19 RepID=H0JEZ1_9PSED
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM23081.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_4_160
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(177127..177735)
DNA (609bp) protein (203aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcalige
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IER2_BORPD
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX
SCNpilot_solid_1_scaffold_4_161
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(177728..178072)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000381AEC1
Glutaredoxin
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894, ECO:0000313|EMBL:CDM23079.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" sourc
SCNpilot_solid_1_scaffold_4_162
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(178090..178911)
DNA (822bp) protein (274aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltra
Release factor glutamine methyltransferase n=3 Tax=Bordetella RepID=Q7WCE2_BORPA rbh
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2
SCNpilot_solid_1_scaffold_4_163
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(178930..180009)
DNA (1080bp) protein (360aa)
Peptide chain release factor 1 n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=RF1_BORPD rbh
Peptide chain release factor 1 rbh
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093, ECO:0000313|EMBL:CDM23077.1}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaprote
SCNpilot_solid_1_scaffold_4_164
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(180093..181370)
DNA (1278bp) protein (426aa)
Glutamyl-tRNA reductase (EC:1.2.1.70) rbh
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|Rule
glutamyl-tRNA reductase n=1 Tax=Pusillimonas noertemannii RepID=UPI000305DC43 rbh
SCNpilot_solid_1_scaffold_4_trna_1
unknown

Not on your lists

181490..181562
DNA (73bp)
transferRNA
SCNpilot_solid_1_scaffold_4_165
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

181744..183612
DNA (1869bp) protein (623aa)
RNA-directed DNA polymerase (EC:2.7.7.49)
RNA-directed DNA polymerase n=1 Tax=Burkholderia terrae BS001 RepID=I5CER5_9BURK rbh
RNA-directed DNA polymerase {ECO:0000313|EMBL:EIM94383.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia
SCNpilot_solid_1_scaffold_4_166
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

183937..186909
DNA (2973bp) protein (991aa)
Uncharacterized protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JV47_9RHIZ rbh
DNA repair protein {ECO:0000313|EMBL:GAO24302.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.
hypothetical protein
SCNpilot_solid_1_scaffold_4_167
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(187208..187840)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM30 RepID=J2YB39_9PSED
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
hypothetical protein
SCNpilot_solid_1_scaffold_4_168
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(189685..189966)
DNA (282bp) protein (94aa)
Uncharacterized protein n=2 Tax=Bordetella RepID=K0MAT0_BORPB
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCN21169.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchisep
SCNpilot_solid_1_scaffold_4_169
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(190252..192330)
DNA (2079bp) protein (693aa)
AsmA protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GT89_PUSST rbh
AsmA protein rbh
AsmA protein {ECO:0000313|EMBL:AEC22201.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7)
SCNpilot_solid_1_scaffold_4_170
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(192463..193743)
DNA (1281bp) protein (427aa)
Cysteine desulfurase (EC:2.8.1.7) rbh
Cysteine desulfurase {ECO:0000313|EMBL:CDM23033.1}; EC=2.8.1.7 {ECO:0000313|EMBL:CDM23033.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Cas
aminotransferase n=1 Tax=Variovorax paradoxus RepID=UPI000367D9E7 rbh
SCNpilot_solid_1_scaffold_4_171
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(193845..195134)
DNA (1290bp) protein (430aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Martelella mediterranea RepID=UPI00036CA8AA rbh
Putative TRAP transporter large permease protein {ECO:0000313|EMBL:EKF41462.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;
Putative TRAP transporter large permease protein
SCNpilot_solid_1_scaffold_4_172
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(195156..195668)
DNA (513bp) protein (171aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Martelella mediterranea RepID=UPI00037E10A1
TRAP-type C4-dicarboxylate transport system, small permease component {ECO:0000313|EMBL:EKF41461.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriace
tripartite ATP-independent periplasmic transporter DctQ
SCNpilot_solid_1_scaffold_4_173
Halomonas sp. HAL1, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(195699..196688)
DNA (990bp) protein (330aa)
TRAP dicarboxylate transporter subunit DctP n=1 Tax=Halomonas sp. HAL1 RepID=G4F8U9_9GAMM rbh
TRAP dicarboxylate transporter subunit DctP {ECO:0000313|EMBL:EHA14895.1}; TaxID=550984 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="
TRAP dicarboxylate transporter-DctP subunit
SCNpilot_solid_1_scaffold_4_174
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

196898..197806
DNA (909bp) protein (303aa)
Transcriptional regulator, LysR family n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZGF1_9BRAD rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KFI29327.1}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Ha
transcriptional regulator, LysR family
SCNpilot_solid_1_scaffold_4_175
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

197818..198510
DNA (693bp) protein (231aa)
allophanate hydrolase subunit1 (ahs1) (EC:3.5.1.54)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI0003644C75
Uncharacterized protein {ECO:0000313|EMBL:AGW88466.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii
SCNpilot_solid_1_scaffold_4_176
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

198507..199496
DNA (990bp) protein (330aa)
urea amidolyase-like protein (EC:3.5.1.54)
Urea amidolyase related protein {ECO:0000313|EMBL:ACL55922.1}; EC=3.5.1.54 {ECO:0000313|EMBL:ACL55922.1};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobact
Urea amidolyase related protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IGM2_METNO
SCNpilot_solid_1_scaffold_4_177
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

199512..200318
DNA (807bp) protein (269aa)
UPF0271 protein Mnod_0902 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IGM4_METNO
LamB/YcsF family protein
UPF0271 protein Mnod_0902 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylob
SCNpilot_solid_1_scaffold_4_178
Rahnella aquatilis, Rahnella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

200442..201785
DNA (1344bp) protein (448aa)
Diguanylate cyclase with PAS/PAC and GAF sensors n=2 Tax=Rahnella RepID=E8XQ40_RAHSY rbh
PAS/PAC and GAF sensor-containing diguanylate cyclase rbh
PAS/PAC and GAF sensor-containing diguanylate cyclase {ECO:0000313|EMBL:AFE57264.1}; TaxID=1151116 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Rahnel
Displaying items 151-180 of 402 in total

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