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SCNpilot_solid_1_scaffold_8

Search features with annotation key words

Displaying items 121-150 of 552 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_8_120
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(137302..138276)
DNA (975bp) protein (325aa)
Thiamin biosynthesis lipoprotein ApbE rbh
Thiamin biosynthesis lipoprotein ApbE {ECO:0000313|EMBL:CDM25035.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Cas
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein id=5080006 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
SCNpilot_solid_1_scaffold_8_121
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(138257..140467)
DNA (2211bp) protein (737aa)
Sulfite reductase [NADPH] flavoprotein alpha-component {ECO:0000313|EMBL:CDM25036.1}; EC=1.8.1.2 {ECO:0000313|EMBL:CDM25036.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Bu
Sulfite reductase [NADPH] flavoprotein alpha-component (EC:1.8.1.2) rbh
Oxidoreductase FAD/NAD(P)-binding domain-containing protein id=1262567 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
SCNpilot_solid_1_scaffold_8_122
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140473..140949)
DNA (477bp) protein (159aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYM4_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM25037.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_8_123
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140988..141479)
DNA (492bp) protein (164aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYM3_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM25038.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_8_124
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141660..142961)
DNA (1302bp) protein (434aa)
CoA-transferase family III protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RTR7_9BURK rbh
L-carnitine dehydratase/bile acid-inducible protein F rbh
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:CDM25039.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniell
SCNpilot_solid_1_scaffold_8_125
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(142973..144160)
DNA (1188bp) protein (396aa)
Glutaryl-CoA dehydrogenase (EC:1.3.8.6) rbh
Glutaryl-CoA dehydrogenase {ECO:0000313|EMBL:CDM25040.1}; EC=1.3.8.6 {ECO:0000313|EMBL:CDM25040.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenacea
Acyl-CoA dehydrogenase domain protein n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZIR1_THASP rbh
SCNpilot_solid_1_scaffold_8_126
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

144279..145238
DNA (960bp) protein (320aa)
Transcriptional regulator, LysR family n=2 Tax=Thauera RepID=C4ZIR0_THASP rbh
transcriptional regulator, LysR family rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CDM25041.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Ca
SCNpilot_solid_1_scaffold_8_127
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(145198..146562)
DNA (1365bp) protein (455aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62) rbh
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:CDM25054.1}; EC=2.6.1.62 {ECO:0000313|EMBL:CDM25054.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteri
Aminotransferase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWV0_PUSST rbh
SCNpilot_solid_1_scaffold_8_128
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(146586..148076)
DNA (1491bp) protein (497aa)
Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC:2.6.1.1) rbh
Transcriptional regulator, GntR family domain / Aspartate aminotransferase {ECO:0000313|EMBL:CDM25056.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CDM25056.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Be
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036D69CD rbh
SCNpilot_solid_1_scaffold_8_129
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

148182..149450
DNA (1269bp) protein (423aa)
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC:2.6.1.19) rbh
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase {ECO:0000313|EMBL:CDM25061.1}; EC=2.6.1.19 {ECO:0000313|EMBL:CDM25061.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria;
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00037F1105 rbh
SCNpilot_solid_1_scaffold_8_130
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

149487..150578
DNA (1092bp) protein (364aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcal
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI000379769F rbh
Putrescine transport ATP-binding protein PotA rbh
SCNpilot_solid_1_scaffold_8_131
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

150615..151658
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI000364CFA9 rbh
ABC transporter, periplasmic spermidine putrescine-binding protein PotD rbh
ABC transporter, periplasmic spermidine putrescine-binding protein PotD {ECO:0000313|EMBL:CDM25063.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenac
SCNpilot_solid_1_scaffold_8_132
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

151717..152952
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI000372EDE9 rbh
Spermidine Putrescine ABC transporter permease component PotB rbh
Spermidine Putrescine ABC transporter permease component PotB {ECO:0000313|EMBL:CDM25064.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Caste
SCNpilot_solid_1_scaffold_8_133
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

153022..153858
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036B697A rbh
Spermidine Putrescine ABC transporter permease component potC rbh
Spermidine Putrescine ABC transporter permease component potC {ECO:0000313|EMBL:CDM25065.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Caste
SCNpilot_solid_1_scaffold_8_134
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(153859..155364)
DNA (1506bp) protein (502aa)
Aldehyde dehydrogenase B (EC:1.2.1.22) rbh
Aldehyde dehydrogenase B {ECO:0000313|EMBL:CDM25670.1}; EC=1.2.1.22 {ECO:0000313|EMBL:CDM25670.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae
Bordetella petrii strain DSM 12804, complete genome n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HXP5_BORPD rbh
SCNpilot_solid_1_scaffold_8_135
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

155529..156710
DNA (1182bp) protein (394aa)
Sarcosine oxidase beta subunit (EC:1.5.3.1) rbh
Sarcosine oxidase beta subunit {ECO:0000313|EMBL:CDM25669.1}; EC=1.5.3.1 {ECO:0000313|EMBL:CDM25669.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligen
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2ELC6_9BACT rbh
SCNpilot_solid_1_scaffold_8_136
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

156762..157415
DNA (654bp) protein (218aa)
Predicted transcriptional regulator n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HXN9_BORPD
transcriptional regulator, XRE family with cupin sensor domain
Transcriptional regulator, XRE family with cupin sensor domain {ECO:0000313|EMBL:CDM25668.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Cast
SCNpilot_solid_1_scaffold_8_137
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

157412..158341
DNA (930bp) protein (310aa)
Ornithine cyclodeaminase (EC:4.3.1.12) rbh
Ornithine cyclodeaminase {ECO:0000313|EMBL:CDM25667.1}; EC=4.3.1.12 {ECO:0000313|EMBL:CDM25667.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae
Ornithine cyclodeaminase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P5Y2_AZOS1
SCNpilot_solid_1_scaffold_8_138
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(158460..159803)
DNA (1344bp) protein (448aa)
Tryptophanyl-tRNA synthetase (EC:6.1.1.2) rbh
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {EC
Tryptophan--tRNA ligase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IIV7_BORPD rbh
SCNpilot_solid_1_scaffold_8_139
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(159841..160932)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GXA7_PUSST rbh
ATPase rbh
ATPase {ECO:0000313|EMBL:CDM25067.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;
SCNpilot_solid_1_scaffold_8_140
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(160941..162368)
DNA (1428bp) protein (476aa)
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC:1.8.1.4) rbh
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692, ECO:0000313|EMBL:CDM25068.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacter
Dihydrolipoamide dehydrogenase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GXA6_PUSST rbh
SCNpilot_solid_1_scaffold_8_141
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(162555..163751)
DNA (1197bp) protein (399aa)
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC:2.3.1.61) rbh
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61 {ECO:0000313|EMBL:CDM25069.1};; 2-oxoglutarate dehydrogenase complex component E2 {ECO:00
dihydrolipoamide succinyltransferase n=1 Tax=Pusillimonas noertemannii RepID=UPI0002EA939F rbh
SCNpilot_solid_1_scaffold_8_142
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163791..166670)
DNA (2880bp) protein (960aa)
2-oxoglutarate dehydrogenase E1 component {ECO:0000313|EMBL:CDM25070.1}; EC=1.2.4.2 {ECO:0000313|EMBL:CDM25070.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales
2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2) rbh
Alpha-ketoglutarate decarboxylase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GXA4_PUSST rbh
SCNpilot_solid_1_scaffold_8_143
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

166978..169272
DNA (2295bp) protein (765aa)
NADP-dependent malic enzyme {ECO:0000313|EMBL:CDM25071.1}; EC=1.1.1.40 {ECO:0000313|EMBL:CDM25071.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenac
NADP-dependent malic enzyme (EC:1.1.1.40) rbh
Malic enzyme n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GXA3_PUSST rbh
SCNpilot_solid_1_scaffold_8_144
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(169386..170078)
DNA (693bp) protein (231aa)
Transcriptional regulator, GntR family n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WQW6_VEREI
GntR protein {ECO:0000313|EMBL:BAQ50093.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticu
GntR family transcriptional regulator
SCNpilot_solid_1_scaffold_8_145
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(170075..170968)
DNA (894bp) protein (298aa)
Polysaccharide deacetylase family protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X5K4_VARPD rbh
polysaccharide deacetylase family protein rbh
Polysaccharide deacetylase family protein {ECO:0000313|EMBL:AGU48187.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
SCNpilot_solid_1_scaffold_8_146
unknown

Not on your lists

171103..171282
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_solid_1_scaffold_8_147
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(171222..172517)
DNA (1296bp) protein (432aa)
Citrate synthase (EC:2.3.3.1) rbh
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burk
Type II citrate synthase n=1 Tax=Alcaligenes sp. EGD-AK7 RepID=U7U739_9BURK rbh
SCNpilot_solid_1_scaffold_8_148
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(172534..172797)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GX99_PUSST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM25073.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_8_149
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(172806..173519)
DNA (714bp) protein (238aa)
Succinate dehydrogenase iron-sulfur protein (EC:1.3.99.1) rbh
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GX98_PUSST rbh
Displaying items 121-150 of 552 in total

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