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SCNpilot_solid_1_scaffold_3_147

Organism: SCNPILOT_SOLID_1_Castellaniella_67_33

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Location: comp(152048..152647)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoE n=1 Tax=Pusillimonas noertemannii RepID=UPI0003140CA4 similarity UNIREF
DB: UNIREF100
  • Identity: 78.9
  • Coverage: 199.0
  • Bit_score: 320
  • Evalue 1.10e-84
  • rbh
RNA polymerase sigma factor RpoE similarity KEGG
DB: KEGG
  • Identity: 88.4
  • Coverage: 199.0
  • Bit_score: 357
  • Evalue 2.30e-96
  • rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellanie similarity UNIPROT
DB: UniProtKB
  • Identity: 88.4
  • Coverage: 199.0
  • Bit_score: 357
  • Evalue 1.10e-95

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Taxonomy

Castellaniella defragrans → Castellaniella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 600
ATGAGCGAGCGCGAGGTCGACCTCGCGCTGGTCGAACGCGTGCGGCGCGGCGACCGGCATGCCTTCGACCTGCTGGTGATCAAATACCAGCGCAAGATCATGCGCCTGCTGTCGCGCATGATTCACGATCCCGCCGACATCGAGGACGTCGCCCAGGAAGCGTTCGTCAAGGCCTACCGCGCCTTGCCGCAATTCCGGGGCGACAGCGCCTTCTACACCTGGCTGTATCGCATCGCCATCAACACGGCCCGCAACTGGCAGGCCGCCAATTTCCGCCGGCCGACCACCGTATCCGTACTGGAAAACGAAGAGGGTGAAACTTTTGACCAGATCGATGGCCTAAGTGATCAGAGTACGCCCGAATCGATGATGGCCAGCCGCCAGATCGCCCAGACGGTGAACGAGGCGATCGAGGCGCTGCCGGAAGACCTGCGGACGGCGATCGTGTTGCGGGAGATCGAAGGGATGAGTTATGAAGATATTGCCAGCACCATGCAGTGCCCGATCGGGACGGTCCGTTCCCGGATCTTCCGGGCGCGGGAGGCCATCGCCAGCCGCCTGCGGCCGGTCATGGAACATGACCCGGCGCGCCGCTGGTAA
PROTEIN sequence
Length: 200
MSEREVDLALVERVRRGDRHAFDLLVIKYQRKIMRLLSRMIHDPADIEDVAQEAFVKAYRALPQFRGDSAFYTWLYRIAINTARNWQAANFRRPTTVSVLENEEGETFDQIDGLSDQSTPESMMASRQIAQTVNEAIEALPEDLRTAIVLREIEGMSYEDIASTMQCPIGTVRSRIFRAREAIASRLRPVMEHDPARRW*