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SCNpilot_solid_1_scaffold_31_121

Organism: SCNPILOT_SOLID_1_Castellaniella_67_33

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Location: comp(133439..133675)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUV3_PUSST similarity UNIREF
DB: UNIREF100
  • Identity: 93.6
  • Coverage: 78.0
  • Bit_score: 148
  • Evalue 3.00e-33
RNA-binding protein Hfq similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 78.0
  • Bit_score: 156
  • Evalue 4.00e-36
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castella similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 78.0
  • Bit_score: 156
  • Evalue 2.00e-35

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Taxonomy

Castellaniella defragrans → Castellaniella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 237
ATGAGCAATAAAGGGCAAATTCTTCAAGACCCGTTCCTCAACGCCTTGCGCAAGGACCATGTGCCAGTCTCGATCTACCTGGTCAACGGCATCAAGCTGCAGGGCCAGGTCGAATCCTTTGATCAGTACGTCGTGCTGCTGCGCAACACCGTCACGCAGATGGTGTACAAGCACGCGATCTCCACCGTCGTTCCGGCCCGGCCGGTTTCCTTCCAGGTGGATGACTCTGCTGAATAA
PROTEIN sequence
Length: 79
MSNKGQILQDPFLNALRKDHVPVSIYLVNGIKLQGQVESFDQYVVLLRNTVTQMVYKHAISTVVPARPVSFQVDDSAE*