ggKbase home page

SCNpilot_solid_1_scaffold_31

Search features with annotation key words

Displaying items 121-150 of 153 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_31_119
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(130951..132282)
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUV1_PUSST rbh
HflK protein rbh
HflK protein {ECO:0000313|EMBL:CDM24142.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65
SCNpilot_solid_1_scaffold_31_120
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(132260..133363)
DNA (1104bp) protein (368aa)
GTPase HflX n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0B7Q2_ALCFA rbh
GTP-binding protein HflX rbh
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcalig
SCNpilot_solid_1_scaffold_31_121
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(133439..133675)
DNA (237bp) protein (79aa)
RNA-binding protein Hfq n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUV3_PUSST
RNA-binding protein Hfq
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castella
SCNpilot_solid_1_scaffold_31_122
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(133779..134855)
DNA (1077bp) protein (359aa)
Histidinol-phosphate aminotransferase (EC:2.6.1.9) rbh
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023, ECO:0000313|EMBL:CDM24139.1}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023, ECO:0000313|EMBL:CDM24139.1};; Imidazole acetol-phosp
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D70006 rbh
SCNpilot_solid_1_scaffold_31_123
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(134852..136243)
DNA (1392bp) protein (464aa)
GTPase Der n=2 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=R4Y0M1_ALCXX rbh
GTP-binding protein EngA rbh
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobact
SCNpilot_solid_1_scaffold_31_124
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(136236..137387)
DNA (1152bp) protein (384aa)
Outer membrane protein assembly factor BamB n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUV6_PUSST rbh
Outer membrane protein YfgL rbh
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae;
SCNpilot_solid_1_scaffold_31_125
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(137393..138031)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GVB5_PUSST
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM24136.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_31_126
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(138040..139323)
DNA (1284bp) protein (428aa)
Histidyl-tRNA synthetase (EC:6.1.1.21) rbh
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
Histidine--tRNA ligase n=1 Tax=Alcaligenes sp. EGD-AK7 RepID=U1YFV2_9BURK rbh
SCNpilot_solid_1_scaffold_31_127
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(139327..140634)
DNA (1308bp) protein (436aa)
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.7.1) rbh
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795, ECO:0000313|EMBL:CDM24134.1};; EC=1.17.7.3 {ECO:0000256
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HIS6_ACHXA rbh
SCNpilot_solid_1_scaffold_31_128
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140631..141131)
DNA (501bp) protein (167aa)
Membrane protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GVB8_PUSST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM24133.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_31_129
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141128..142279)
DNA (1152bp) protein (384aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GVB9_PUSST rbh
Ribosomal RNA large subunit methyltransferase N rbh
SCNpilot_solid_1_scaffold_31_130
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(142360..142785)
DNA (426bp) protein (142aa)
Nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.
nucleoside diphosphate kinase n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D7AC89
SCNpilot_solid_1_scaffold_31_131
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


142982..145816
DNA (2835bp) protein (945aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|H
Valyl-tRNA synthetase (EC:6.1.1.9) rbh
valyl-tRNA synthase n=1 Tax=Pusillimonas noertemannii RepID=UPI0002DE015F rbh
SCNpilot_solid_1_scaffold_31_132
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(145867..147501)
DNA (1635bp) protein (545aa)
AMP-binding protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI000304DADF rbh
Medium-chain-fatty-acid CoA ligase {ECO:0000313|EMBL:EIJ46801.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herb
AMP-binding protein
SCNpilot_solid_1_scaffold_31_133
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

147608..148852
DNA (1245bp) protein (415aa)
Nicotinate phosphoribosyltransferase (EC:6.3.4.21) rbh
Nicotinate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838}; Short=NAPRTase {ECO:0000256|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000256|HAMAP-Rule:MF_00570,
nicotinate phosphoribosyltransferase n=1 Tax=Curvibacter lanceolatus RepID=UPI00035DA0E8
SCNpilot_solid_1_scaffold_31_134
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(148901..150358)
DNA (1458bp) protein (486aa)
TldD protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GW71_PUSST rbh
TldD protein, part of proposed TldE/TldD proteolytic complex rbh
TldD protein, part of proposed TldE/TldD proteolytic complex {ECO:0000313|EMBL:CDM24888.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castel
SCNpilot_solid_1_scaffold_31_135
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(150380..151192)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00036E1B6D rbh
putative amidohydrolase rbh
Putative amidohydrolase {ECO:0000313|EMBL:CDM24889.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_31_136
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

151385..151756
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F66E5B
putative DNA-binding protein
Putative DNA-binding protein {ECO:0000313|EMBL:CDM24890.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniel
SCNpilot_solid_1_scaffold_31_137
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(151799..152425)
DNA (627bp) protein (209aa)
Lipoprotein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0UN15_ALCFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM24891.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_31_138
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

152587..155289
DNA (2703bp) protein (901aa)
Membrane alanine aminopeptidase N {ECO:0000313|EMBL:CDM24892.1}; EC=3.4.11.2 {ECO:0000313|EMBL:CDM24892.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcal
Membrane alanine aminopeptidase N (EC:3.4.11.2) rbh
Aminopeptidase N n=2 Tax=Alcaligenes RepID=M5J115_9BURK rbh
SCNpilot_solid_1_scaffold_31_139
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

155326..156348
DNA (1023bp) protein (341aa)
Fructose-1,6-bisphosphatase, type I (EC:3.1.3.11) rbh
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855, ECO:0000313|EMBL:CDM24894.
fructose-1 6-bisphosphatase n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D87844 rbh
SCNpilot_solid_1_scaffold_31_140
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(156436..157419)
DNA (984bp) protein (328aa)
Quinone oxidoreductase (EC:1.6.5.5) rbh
Quinone oxidoreductase {ECO:0000313|EMBL:CDM24895.1}; EC=1.6.5.5 {ECO:0000313|EMBL:CDM24895.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; C
Quinone oxidoreductase n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0UP76_ALCFA rbh
SCNpilot_solid_1_scaffold_31_141
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

157487..158401
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GW78_PUSST rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEC20092.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (s
SCNpilot_solid_1_scaffold_31_142
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

158457..159188
DNA (732bp) protein (244aa)
Probable transcriptional regulatory protein C660_05707 n=2 Tax=Alcaligenes RepID=M5J209_9BURK rbh
hypothetical protein YebC rbh
Probable transcriptional regulatory protein BN940_12201 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castell
SCNpilot_solid_1_scaffold_31_143
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

159185..160483
DNA (1299bp) protein (433aa)
Phosphoribosylamine--glycine ligase (EC:6.3.4.13) rbh
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:CDM24897.1}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:CDM24897.1};; GARS {ECO:0000256|HAMAP
Phosphoribosylamine--glycine ligase n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0B083_ALCFA rbh
SCNpilot_solid_1_scaffold_31_144
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

160506..161408
DNA (903bp) protein (301aa)
Coproporphyrinogen III oxidase, aerobic (EC:1.3.3.3) rbh
coproporphyrinogen III oxidase n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F3FC63 rbh
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprop
SCNpilot_solid_1_scaffold_31_145
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

161408..162025
DNA (618bp) protein (206aa)
Nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18) rbh
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244, ECO:0000313|EMBL:CDM24899.1};; Deamido-NAD(+) diphosphorylase {ECO:0
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FA88_9BURK
SCNpilot_solid_1_scaffold_31_146
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

162022..162417
DNA (396bp) protein (132aa)
Ribosomal silencing factor RsfS n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWP5_PUSST
Ribosomal silencing factor RsfA
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Caste
SCNpilot_solid_1_scaffold_31_147
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

162414..162884
DNA (471bp) protein (157aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP
50S rRNA methyltransferase n=1 Tax=Pelistega sp. HM-7 RepID=V8G1T6_9BURK
LSU m3Psi1915 methyltransferase RlmH
SCNpilot_solid_1_scaffold_31_148
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

162894..164336
DNA (1443bp) protein (481aa)
Pyruvate kinase (EC:2.7.1.40) rbh
Pyruvate kinase {ECO:0000256|RuleBase:RU000504, ECO:0000313|EMBL:CDM24902.1}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504, ECO:0000313|EMBL:CDM24902.1};; TaxID=1437824 species="Bacteria; Proteobacteria
Pyruvate kinase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWP7_PUSST rbh
Displaying items 121-150 of 153 in total

View Taxonomy