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SCNpilot_solid_1_scaffold_31

Search features with annotation key words

Displaying items 31-60 of 153 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_31_30
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30878..32326)
DNA (1449bp) protein (483aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GTZ8_PUSST rbh
Iron-sulfur cluster assembly protein SufB rbh
Iron-sulfur cluster assembly protein SufB {ECO:0000313|EMBL:CDM24272.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source=
SCNpilot_solid_1_scaffold_31_31
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32323..32808)
DNA (486bp) protein (162aa)
BadM/Rrf2 family transcriptional regulator n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GTZ9_PUSST
Iron-sulfur cluster regulator IscR
Iron-sulfur cluster regulator IscR {ECO:0000313|EMBL:CDM24271.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castel
SCNpilot_solid_1_scaffold_31_32
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32886..34727)
DNA (1842bp) protein (614aa)
ABC transporter n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU01_PUSST rbh
Lipid A export ATP-binding/permease protein MsbA rbh
Lipid A export ATP-binding/permease protein MsbA {ECO:0000313|EMBL:CDM24270.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;"
SCNpilot_solid_1_scaffold_31_33
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34843..35370
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU06_PUSST
RNA polymerase sigma-70 factor
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDM24269.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellani
SCNpilot_solid_1_scaffold_31_34
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35367..35831
DNA (465bp) protein (155aa)
Anti-sigma-K factor RskA n=1 Tax=Pseudomonas sp. EGD-AK9 RepID=U2A059_9PSED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM24268.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_31_35
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35845..36267)
DNA (423bp) protein (141aa)
MerR family transcriptional regulator n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU10_PUSST
Transcriptional regulator, MerR family
Transcriptional regulator, MerR family {ECO:0000313|EMBL:CDM24267.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Ca
SCNpilot_solid_1_scaffold_31_36
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36264..36572)
DNA (309bp) protein (103aa)
Integration host factor subunit alpha n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU11_PUSST
Integration host factor alpha subunit
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1437824 species="Bacteria; Proteobacte
SCNpilot_solid_1_scaffold_31_37
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(36584..38989)
DNA (2406bp) protein (802aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tR
Phenylalanyl-tRNA synthetase beta chain (EC:6.1.1.20) rbh
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU12_PUSST rbh
SCNpilot_solid_1_scaffold_31_38
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(39016..40038)
DNA (1023bp) protein (341aa)
Phenylalanyl-tRNA synthetase alpha chain (EC:6.1.1.20) rbh
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-t
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU13_PUSST rbh
SCNpilot_solid_1_scaffold_31_39
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(40117..40476)
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Pusillimonas noertemannii RepID=UPI0002FF16E2
LSU ribosomal protein L20p
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castel
SCNpilot_solid_1_scaffold_31_40
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(40490..40687)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=38 Tax=Bordetella RepID=RL35_BORBR
LSU ribosomal protein L35p
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castel
SCNpilot_solid_1_scaffold_31_41
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40882..41130)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU19_PUSST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM24261.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_31_42
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41170..42687)
DNA (1518bp) protein (506aa)
Putative chelatase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU18_PUSST rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM24260.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_31_43
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42803..43192)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0UYT3_ALCFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM24255.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_31_44
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43623..43961
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Pusillimonas noertemannii RepID=UPI0002FBE658
Nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:CDM24254.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castella
SCNpilot_solid_1_scaffold_31_45
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43979..45208
DNA (1230bp) protein (410aa)
ammonium transporter n=1 Tax=Pusillimonas noertemannii RepID=UPI0002DDF2DC
Ammonium transporter rbh
Ammonium transporter {ECO:0000256|RuleBase:RU362002, ECO:0000313|EMBL:CDM24253.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.
SCNpilot_solid_1_scaffold_31_46
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45244..46950)
DNA (1707bp) protein (569aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8H7_ALIDK
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:AEB86702.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycl
SCNpilot_solid_1_scaffold_31_47
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47069..48832)
DNA (1764bp) protein (588aa)
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC:2.7.3.9) rbh
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732, ECO:0000313|EMBL:CDM24251.1};; Phosphotransferase system, enzyme I {ECO:00002
phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Pusillimonas noertemannii RepID=UPI0002E892B9 rbh
SCNpilot_solid_1_scaffold_31_48
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48876..49145)
DNA (270bp) protein (90aa)
Phosphocarrier protein HPr n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU24_PUSST
phosphocarrier protein HPr
Phosphocarrier protein HPr {ECO:0000313|EMBL:CDM24250.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella
SCNpilot_solid_1_scaffold_31_49
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49161..49574)
DNA (414bp) protein (138aa)
IIA component of sugar transport PTS system n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU25_PUSST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM24249.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_31_50
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49571..50533)
DNA (963bp) protein (321aa)
Glutathione synthetase (EC:6.3.2.3) rbh
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162, ECO:0000313|EMBL:CDM24248.1}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162, ECO:0000313|EMBL:CDM24248.1};; GSH synthetase {ECO:0000256|HAMAP-Rul
Glutathione synthetase n=2 Tax=Bordetella bronchiseptica RepID=K0MUX1_BORBM rbh
SCNpilot_solid_1_scaffold_31_51
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50595..51071)
DNA (477bp) protein (159aa)
translation initiation factor IF-3 n=1 Tax=Pusillimonas noertemannii RepID=UPI00031F9AC6
Translation initiation factor 3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenacea
SCNpilot_solid_1_scaffold_31_52
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51173..53119)
DNA (1947bp) protein (649aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:000
Threonyl-tRNA synthetase (EC:6.1.1.3) rbh
Threonine--tRNA ligase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU28_PUSST rbh
SCNpilot_solid_1_scaffold_31_trna_1
unknown

Not on your lists

comp(53351..53424)
DNA (74bp)
transferRNA
SCNpilot_solid_1_scaffold_31_53
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53484..54173)
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003815CE4
Spermidine synthase-like protein rbh
Spermidine synthase-like protein {ECO:0000313|EMBL:CDM24243.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castella
SCNpilot_solid_1_scaffold_31_54
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54355..55536)
DNA (1182bp) protein (394aa)
3-ketoacyl-CoA thiolase / Acetyl-CoA acetyltransferase (EC:2.3.1.9 2.3.1.16) rbh
3-ketoacyl-CoA thiolase / Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:CDM24242.1}; EC=2.3.1.16 {ECO:0000313|EMBL:CDM24242.1};; EC=2.3.1.9 {ECO:0000313|EMBL:CDM24242.1};; TaxID=1437824 species="Bact
Beta-ketothiolase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRH9_PUSST rbh
SCNpilot_solid_1_scaffold_31_55
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55648..56616)
DNA (969bp) protein (323aa)
Chemotaxis protein CheV rbh
Chemotaxis protein CheV {ECO:0000313|EMBL:CDM24241.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
CheW protein id=12551066 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
SCNpilot_solid_1_scaffold_31_56
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56790..57524
DNA (735bp) protein (245aa)
Extracellular solute-binding protein family 3 n=2 Tax=Alicycliphilus denitrificans RepID=E8U1C8_ALIDB rbh
ABC transporter substrate-binding protein
ABC-type transporter, periplasmic subunit family 3 {ECO:0000313|EMBL:AEB83381.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;"
SCNpilot_solid_1_scaffold_31_57
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57577..58173)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRE5_PUSST
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM24207.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_31_58
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58266..59867)
DNA (1602bp) protein (534aa)
heme ABC transporter ATP-binding protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000308BCAD rbh
probable ATP-binding ABC transporter protein rbh
Probable ATP-binding ABC transporter protein {ECO:0000313|EMBL:CDM24206.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" sour
Displaying items 31-60 of 153 in total

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