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scnpilot_solids1_trim150_scaffold_742

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_742_1
unknown

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comp(174..761)
DNA (588bp) protein (196aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_742_2
Paraglaciecola mesophila, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(758..2542)
DNA (1785bp) protein (595aa)
Uncharacterized protein n=1 Tax=Glaciecola mesophila KMM 241 RepID=K6Z5G5_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:GAC24248.1}; TaxID=1128912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola mesophila KMM 241.;"
scnpilot_solids1_trim150_scaffold_742_3
Paraglaciecola mesophila, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2553..4352)
DNA (1800bp) protein (600aa)
Uncharacterized protein n=1 Tax=Glaciecola mesophila KMM 241 RepID=K6XUF6_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:GAC24249.1}; TaxID=1128912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola mesophila KMM 241.;"
scnpilot_solids1_trim150_scaffold_742_4
Paraglaciecola mesophila, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4349..5443)
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Glaciecola mesophila KMM 241 RepID=K6YJS7_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:GAC24251.1}; TaxID=1128912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola mesophila KMM 241.;"
scnpilot_solids1_trim150_scaffold_742_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5513..6691)
DNA (1179bp) protein (393aa)
UPI0003CEAD63 related cluster n=1 Tax=unknown RepID=UPI0003CEAD63 rbh
Uncharacterized protein {ECO:0000313|EMBL:KDP74028.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_742_6

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comp(6778..8886)
DNA (2109bp) protein (703aa)
hypothetical protein n=1 Tax=Pseudomonas fluorescens RepID=UPI0002F8B593 rbh
Putative uncharacterized protein {ECO:0000313|EMBL:ABZ09821.1}; TaxID=455555 species="unclassified sequences; environmental samples.;" source="uncultured marine microorganism HF4000_APKG8K5.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_742_7

Not on your lists

comp(8883..9866)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Pseudomonas fluorescens RepID=UPI0002F58CC1
Putative uncharacterized protein {ECO:0000313|EMBL:ABZ09822.1}; TaxID=455555 species="unclassified sequences; environmental samples.;" source="uncultured marine microorganism HF4000_APKG8K5.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_742_8
Candidatus Puniceispirillum marinum, Candidatus Puniceispirillum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9868..12552)
DNA (2685bp) protein (895aa)
endonuclease (EC:2.7.2.4) rbh
Endonuclease {ECO:0000313|EMBL:ADE39542.1}; EC=2.7.2.4 {ECO:0000313|EMBL:ADE39542.1};; TaxID=488538 species="Bacteria; Proteobacteria; Alphaproteobacteria; SAR116 cluster; Candidatus Puniceispirillum.;" source="Puniceispirillum marinum (strain IMCC1322).;"
Endonuclease n=1 Tax=Puniceispirillum marinum (strain IMCC1322) RepID=D5BTE5_PUNMI rbh
scnpilot_solids1_trim150_scaffold_742_9
Candidatus Puniceispirillum marinum, Candidatus Puniceispirillum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12545..14014)
DNA (1470bp) protein (490aa)
hypothetical protein, partial n=1 Tax=Pseudomonas fluorescens RepID=UPI000307CCBB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADE39543.1}; TaxID=488538 species="Bacteria; Proteobacteria; Alphaproteobacteria; SAR116 cluster; Candidatus Puniceispirillum.;" source="Puniceispirillum marinum (strain IMCC1322).;"
scnpilot_solids1_trim150_scaffold_742_10
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14146..15636)
DNA (1491bp) protein (497aa)
DNA methylase; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] rbh
DNA methylase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JXJ9_AGRVS rbh
DNA methylase {ECO:0000313|EMBL:ACM36976.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
scnpilot_solids1_trim150_scaffold_742_11
Mesorhizobium sp. LSJC265A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15633..16418)
DNA (786bp) protein (262aa)
DNA mismatch endonuclease Vsr; K07458 DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
UPI0003CE6A5A related cluster n=1 Tax=unknown RepID=UPI0003CE6A5A
Uncharacterized protein {ECO:0000313|EMBL:ESX02331.1}; TaxID=1287322 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC265A00.;"
scnpilot_solids1_trim150_scaffold_742_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16573..17070)
DNA (498bp) protein (166aa)
SseB protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NJ51_9GAMM
SseB protein
SseB protein {ECO:0000313|EMBL:AGG90924.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_742_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17288..17572)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ14_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90925.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_742_14
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17616..18410)
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035F670E
Uncharacterized protein {ECO:0000313|EMBL:AIF48161.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_solids1_trim150_scaffold_742_15
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18547..18879
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003693D81
DNA-binding protein {ECO:0000313|EMBL:AIF48160.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
putative transcriptional regulator
scnpilot_solids1_trim150_scaffold_742_16
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19064..19933)
DNA (870bp) protein (290aa)
Putative Zn peptidase n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IM78_9BURK
Uncharacterized protein {ECO:0000313|EMBL:BAR63593.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_742_17
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19930..20319)
DNA (390bp) protein (130aa)
XRE family transcriptional regulator n=1 Tax=Xanthomonas axonopodis pv. malvacearum str. GSPB1386 RepID=K8FVY2_9XANT
Uncharacterized protein {ECO:0000313|EMBL:EFF48227.1}; TaxID=427082 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535.;"
helix-turn-helix domain-containing protein
scnpilot_solids1_trim150_scaffold_742_18
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20534..20794
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B2AJY3_CUPTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP63810.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
scnpilot_solids1_trim150_scaffold_742_19
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20769..21959
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0003208741 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHX12012.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_742_20
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21956..22396
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B2AJY1_CUPTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP63808.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
Displaying 20 items

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