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scnpilot_solids1_trim150_scaffold_1571

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1571_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1303
DNA (1302bp) protein (434aa)
Conjugal transfer protein TrbI n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8ADK9_RHIRD rbh
Conjugal transfer protein TrbI {ECO:0000313|EMBL:EMS95932.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
Conjugation TrbI-like protein; K03195 type IV secretion system protein VirB10 rbh
scnpilot_solids1_trim150_scaffold_1571_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1345..1809)
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PJK2_9BRAD
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU42248.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
scnpilot_solids1_trim150_scaffold_1571_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1810..3009)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PNA0_9BRAD rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:ADU42249.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
scnpilot_solids1_trim150_scaffold_1571_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3006..4016)
DNA (1011bp) protein (337aa)
Patatin n=2 Tax=Bradyrhizobiaceae RepID=E6VLJ7_RHOPX rbh
patatin rbh
Patatin {ECO:0000313|EMBL:ADU42250.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
scnpilot_solids1_trim150_scaffold_1571_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4022..4246)
DNA (225bp) protein (75aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PEA3_9BRAD
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU42251.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
scnpilot_solids1_trim150_scaffold_1571_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4486..4701
DNA (216bp) protein (72aa)
Helix-turn-helix domain protein n=2 Tax=Bradyrhizobiaceae RepID=E6VLJ9_RHOPX
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADU42252.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
scnpilot_solids1_trim150_scaffold_1571_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4713..5594
DNA (882bp) protein (294aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PJK6_9BRAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS40984.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
scnpilot_solids1_trim150_scaffold_1571_8
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5900..6619
DNA (720bp) protein (240aa)
LuxR family transcriptional regulator n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5Q4Z3_9RHIZ rbh
LuxR family transcriptional regulator {ECO:0000313|EMBL:EJT05053.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
cinR; autoinducer transcriptional regulator protein rbh
scnpilot_solids1_trim150_scaffold_1571_9
Sinorhizobium sp. M14, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6717..7379
DNA (663bp) protein (221aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=430451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium sp. M14.;"
TraI n=1 Tax=Sinorhizobium sp. M14 RepID=R4ILG8_9RHIZ rbh
autoinducer synthesis protein rbh
scnpilot_solids1_trim150_scaffold_1571_10
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7498..8202
DNA (705bp) protein (235aa)
Autoinducer-binding domain protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IQ01_XANP2
Transcriptional regulator protein TraR 1 {ECO:0000313|EMBL:AJD42395.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
autoinducer-binding domain-containing protein
scnpilot_solids1_trim150_scaffold_1571_11
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8332..8556
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8II20_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL56058.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids1_trim150_scaffold_1571_12
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8553..8912
DNA (360bp) protein (120aa)
transcriptional modulator of MazE/toxin MazF; K07171 mRNA interferase [EC:3.1.-.-]
Transcriptional modulator of MazE/toxin, MazF n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8II21_METNO
Transcriptional modulator of MazE/toxin, MazF {ECO:0000313|EMBL:ACL56059.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids1_trim150_scaffold_1571_13
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8947..9165)
DNA (219bp) protein (73aa)
Helix-turn-helix domain protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VPU0_RHOPX
Transcriptional regulator {ECO:0000313|EMBL:EZQ17743.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
helix-turn-helix domain-containing protein
scnpilot_solids1_trim150_scaffold_1571_14
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9296..9625
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH01_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KJF71796.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1571_15
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9745..10911)
DNA (1167bp) protein (389aa)
Rcorf79 n=1 Tax=Agrobacterium rhizogenes RepID=A8W099_AGRRH rbh
Rcorf79 {ECO:0000313|EMBL:ABW33636.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
traB; putative conjugal transfer protein traB rbh
scnpilot_solids1_trim150_scaffold_1571_16
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10901..11467)
DNA (567bp) protein (189aa)
conjugal transfer protein TraF n=1 Tax=Rhizobium mongolense RepID=UPI0003B4FA50
Conjugal transfer signal peptidase protein TraF 1 {ECO:0000313|EMBL:AIC29712.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
traF; conjugal transfer signal peptidase protein TraF
scnpilot_solids1_trim150_scaffold_1571_17
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11464..12306)
DNA (843bp) protein (281aa)
Putative conjugal transfer protein traA n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UPN6_9RHIZ rbh
Ti-type conjugative transfer relaxase TraA {ECO:0000313|EMBL:CDN58501.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
traA-2; conjugal transfer relaxase TraA 2
Displaying 17 items

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