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scnpilot_solids1_trim150_scaffold_400

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_400_1
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..656)
DNA (654bp) protein (218aa)
UPI0003CFAF38 related cluster n=1 Tax=unknown RepID=UPI0003CFAF38
Uncharacterized protein {ECO:0000313|EMBL:EXL04900.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_400_2
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1065..2135
DNA (1071bp) protein (357aa)
UPI0003CF5A9E related cluster n=1 Tax=unknown RepID=UPI0003CF5A9E
Uncharacterized protein {ECO:0000313|EMBL:EZQ14531.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_400_3
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2382..2852)
DNA (471bp) protein (157aa)
Transcriptional regulator syrB n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FIW6_9RHIZ
Transcriptional regulator syrB {ECO:0000313|EMBL:CCV16355.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
transcriptional regulator; K07497 putative transposase
scnpilot_solids1_trim150_scaffold_400_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3479..4735)
DNA (1257bp) protein (419aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GE27_ALIDK rbh
TRAP dicarboxylate transporter subunit DctM {ECO:0000313|EMBL:GAO23195.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
TRAP dicarboxylate transporter subunit DctM rbh
scnpilot_solids1_trim150_scaffold_400_5
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4732..5277)
DNA (546bp) protein (182aa)
TRAP dicarboxylate transporter, DctP-like subunit n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B456_RHIRD
TRAP transporter {ECO:0000313|EMBL:KJR61670.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
TRAP dicarboxylate transport system, small permease component (DctQ-like)
scnpilot_solids1_trim150_scaffold_400_6
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5304..6299)
DNA (996bp) protein (332aa)
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family n=1 Tax=Rhizobium sp. AP16 RepID=J2DEK1_9RHIZ rbh
TRAP dicarboxylate transporter subunit DctP {ECO:0000313|EMBL:GAK72815.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
TRAP dicarboxylate transporter substrate-binding protein DctP subunit rbh
scnpilot_solids1_trim150_scaffold_400_7
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6373..7440)
DNA (1068bp) protein (356aa)
PROBABLE TRANSKETOLASE BETA SUBUNIT PROTEIN n=1 Tax=Rhizobium loti RepID=Q8KJJ6_RHILI rbh
PROBABLE TRANSKETOLASE BETA SUBUNIT PROTEIN {ECO:0000313|EMBL:CAD31488.1}; TaxID=381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (Mesorhizobium loti).;"
putative 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE rbh
scnpilot_solids1_trim150_scaffold_400_8
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7437..8291)
DNA (855bp) protein (285aa)
transketolase; K00615 transketolase [EC:2.2.1.1] rbh
UPI0003D0467D related cluster n=1 Tax=unknown RepID=UPI0003D0467D rbh
Transketolase {ECO:0000313|EMBL:ESZ27403.1}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
scnpilot_solids1_trim150_scaffold_400_9
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8297..9052)
DNA (756bp) protein (252aa)
Short-chain type dehydrogenase/reductase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98B18_RHILO rbh
short-chain type dehydrogenase/reductase rbh
Short-chain type dehydrogenase/reductase {ECO:0000313|EMBL:BAB52154.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
scnpilot_solids1_trim150_scaffold_400_10
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9132..10034
DNA (903bp) protein (301aa)
Transcriptional regulator, LysR family n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U812_METS4 rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACA19728.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids1_trim150_scaffold_400_11
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10296..11306)
DNA (1011bp) protein (337aa)
alcohol dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037692B8 rbh
Theronine dehydrogenase-like Zn-dependent dehydrogenase {ECO:0000313|EMBL:EIM24592.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
alcohol dehydrogenase groes domain protein rbh
scnpilot_solids1_trim150_scaffold_400_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11589..12314)
DNA (726bp) protein (242aa)
Transcriptional regulator, GntR family n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CFC4_AGRT5
GntR family transcriptional regulator {ECO:0000313|EMBL:KGM35504.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
GntR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_400_13
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

12595..13956
DNA (1362bp) protein (454aa)
Extracellular solute-binding protein n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8FVU4_9CYAN rbh
Extracellular solute-binding protein {ECO:0000313|EMBL:CBN54484.1}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein rbh
scnpilot_solids1_trim150_scaffold_400_14
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13964..14896
DNA (933bp) protein (311aa)
Putative ABC transporter permease protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S3P7_9BRAD
Putative ABC transporter permease protein {ECO:0000313|EMBL:CCD88824.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
ABC transporter permease
scnpilot_solids1_trim150_scaffold_400_15
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14893..15750
DNA (858bp) protein (286aa)
ABC-type sugar transport system, permease component n=1 Tax=Polaromonas sp. CF318 RepID=J2LG07_9BURK
ABC transporter permease {ECO:0000313|EMBL:EWY39625.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein
scnpilot_solids1_trim150_scaffold_400_16
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16040..17164)
DNA (1125bp) protein (375aa)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
Alcohol dehydrogenase n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HNZ9_9RHIZ
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
scnpilot_solids1_trim150_scaffold_400_17
unknown

Not on your lists

comp(17195..17506)
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F2E7DA
scnpilot_solids1_trim150_scaffold_400_18
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17563..18636)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000308C0C8 rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EWY42132.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
basic membrane lipoprotein rbh
scnpilot_solids1_trim150_scaffold_400_19
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18672..19592)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F52B46 rbh
Putative ABC-type transport system, permease component {ECO:0000313|EMBL:EJL49811.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
sugar ABC transporter permease protein rbh
scnpilot_solids1_trim150_scaffold_400_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19592..20686)
DNA (1095bp) protein (365aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030EDA34 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS31095.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
sugar ABC transporter permease protein rbh
scnpilot_solids1_trim150_scaffold_400_21
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20683..22260)
DNA (1578bp) protein (526aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E735BD rbh
ABC transporter {ECO:0000313|EMBL:AHB77814.1}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
scnpilot_solids1_trim150_scaffold_400_22
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22332..23303)
DNA (972bp) protein (324aa)
vanB family oxidoreductase/oxygenase (EC:1.14.13.82); K03863 vanillate monooxygenase [EC:1.14.13.82]
Oxidoreductase/oxygenase, vanB family {ECO:0000313|EMBL:ABR89931.1}; EC=1.14.13.82 {ECO:0000313|EMBL:ABR89931.1};; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DE1CDD rbh
scnpilot_solids1_trim150_scaffold_400_23
Gluconacetobacter sp. SXCC-1, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23303..23932)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F7C981 rbh
Protein gstA {ECO:0000313|EMBL:EGG79118.1}; TaxID=1004836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter sp. SXCC-1.;"
glutathione S-transferase
scnpilot_solids1_trim150_scaffold_400_24
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23932..24807)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D8A5AE rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM30102.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
scnpilot_solids1_trim150_scaffold_400_25
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24835..25509)
DNA (675bp) protein (225aa)
Rieske (2Fe-2S) iron-sulfur domain-containing protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F1V6_9RHIZ
Rieske (2Fe-2S) iron-sulfur domain-containing protein {ECO:0000313|EMBL:EHS53342.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
oxidoreductase
scnpilot_solids1_trim150_scaffold_400_26
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25640..26617
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000319F98B rbh
Uncharacterized protein {ECO:0000313|EMBL:KFL31144.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
LysR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_400_27
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26618..27877)
DNA (1260bp) protein (420aa)
class V aminotransferase; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] rbh
Elongation factor P n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FUG3_9RHOB rbh
Elongation factor P {ECO:0000313|EMBL:EDM70235.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. AzwK-3b.;"
scnpilot_solids1_trim150_scaffold_400_28
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28037..28309)
DNA (273bp) protein (91aa)
ureidoglycolate lyase (EC:4.3.2.3)
Putative fumarylacetoacetate (FAA) hydrolase protein n=1 Tax=Gluconobacter morbifer G707 RepID=G6XJX6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KJS09728.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
scnpilot_solids1_trim150_scaffold_400_29
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28294..28902)
DNA (609bp) protein (203aa)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase n=1 Tax=Ochrobactrum intermedium 229E RepID=U4VHB6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KJS09728.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
fumarylacetoacetate (FAA) hydrolase
scnpilot_solids1_trim150_scaffold_400_30
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28972..29163
DNA (192bp) protein (64aa)
UPI0003CE8308 related cluster n=1 Tax=unknown RepID=UPI0003CE8308
Transposase {ECO:0000313|EMBL:EZQ14570.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
transposase IS4 family protein
Displaying items 1-30 of 41 in total

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