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scnpilot_solids1_trim150_scaffold_525

Search features with annotation key words

Displaying items 1-30 of 130 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_525_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1128)
DNA (1128bp) protein (376aa)
Chaperone protein DnaK n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI86_9GAMM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
chaperone protein DnaK
scnpilot_solids1_trim150_scaffold_525_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1283..1816)
DNA (534bp) protein (178aa)
Protein GrpE n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI1_9GAMM rbh
molecular chaperone GrpE (heat shock protein) rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_525_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1898..2134)
DNA (237bp) protein (79aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI83_9GAMM
heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_525_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2134..2901)
DNA (768bp) protein (256aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI0_9GAMM
heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_525_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3025..4698
DNA (1674bp) protein (558aa)
DNA repair protein RecN n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH9_9GAMM rbh
DNA replication and repair protein RecN rbh
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_525_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4711..5346)
DNA (636bp) protein (212aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH8_9GAMM rbh
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain rbh
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:AGG88954.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_525_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5443..7041
DNA (1599bp) protein (533aa)
Signal transduction histidine kinase, glucose-6-phosphate specific n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH7_9GAMM rbh
signal transduction histidine kinase, glucose-6-phosphate specific rbh
Signal transduction histidine kinase, glucose-6-phosphate specific {ECO:0000313|EMBL:AGG88955.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_525_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7340..7762)
DNA (423bp) protein (141aa)
Fe2+/Zn2+ uptake regulation protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH6_9GAMM
Fe2+/Zn2+ uptake regulation protein
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:AGG88956.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_525_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7837..8307
DNA (471bp) protein (157aa)
Small protein A (TmRNA-binding) n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH5_9GAMM rbh
small protein A (tmRNA-binding) rbh
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_525_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8325..8603)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NH40_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_525_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8596..9027)
DNA (432bp) protein (144aa)
Oligoketide cyclase/lipid transport protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI76_9GAMM
Oligoketide cyclase/lipid transport protein {ECO:0000313|EMBL:EIL99167.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
oligoketide cyclase/lipid transport protein
scnpilot_solids1_trim150_scaffold_525_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9170..9664
DNA (495bp) protein (165aa)
SsrA-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6T8_9GAMM
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SsrA-binding protein
scnpilot_solids1_trim150_scaffold_525_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10250..10573
DNA (324bp) protein (108aa)
Cytochrome c553 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI74_9GAMM
cytochrome c553
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_525_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10593..10946
DNA (354bp) protein (118aa)
Cytochrome c553 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI73_9GAMM
cytochrome c553
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_525_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11021..11629)
DNA (609bp) protein (203aa)
Fe/S biogenesis protein NfuA n=1 Tax=Rhodanobacter denitrificans RepID=I4WXG9_9GAMM rbh
thioredoxin-like protein rbh
Fe/S biogenesis protein NfuA {ECO:0000256|HAMAP-Rule:MF_01637, ECO:0000256|SAAS:SAAS00035357}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_525_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11783..12124
DNA (342bp) protein (114aa)
pterin-4a-carbinolamine dehydratase (EC:4.2.1.96)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXG8_9GAMM
scnpilot_solids1_trim150_scaffold_525_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12125..13123)
DNA (999bp) protein (333aa)
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-) rbh
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Pseudouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDY9_9GAMM rbh
scnpilot_solids1_trim150_scaffold_525_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13459..16617
DNA (3159bp) protein (1053aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ribonuclease E n=1 Tax=Rhodanobacter denitrificans RepID=M4NMS9_9GAMM rbh
ribonuclease, Rne/Rng family rbh
scnpilot_solids1_trim150_scaffold_525_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16707..17360)
DNA (654bp) protein (218aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Rhodanobacter denitrificans RepID=I4WXG5_9GAMM rbh
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EIL99159.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
scnpilot_solids1_trim150_scaffold_525_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17469..17723)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXG4_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89244.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_525_trna_2
unknown

Not on your lists

comp(18007..18088)
DNA (82bp)
transferRNA Leu
scnpilot_solids1_trim150_scaffold_525_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18045..18533)
DNA (489bp) protein (163aa)
Preprotein translocase subunit SecG n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI12_9GAMM
Preprotein translocase subunit SecG {ECO:0000313|EMBL:EIL99103.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
protein translocase subunit secG
scnpilot_solids1_trim150_scaffold_525_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18541..19308)
DNA (768bp) protein (256aa)
triosephosphate isomerase (EC:5.3.1.1) rbh
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Triosephosphate isomerase n=1 Tax=Rhodanobacter denitrificans RepID=M4NNG7_9GAMM rbh
scnpilot_solids1_trim150_scaffold_525_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19434..20243
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NGM0_9GAMM rbh
short-chain dehydrogenase of unknown substrate specificity rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG89247.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_525_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20301..20975
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXG0_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG89248.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_525_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21021..21956)
DNA (936bp) protein (312aa)
Dioxygenase, isopenicillin N synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI08_9GAMM rbh
Dioxygenase, isopenicillin N synthase {ECO:0000313|EMBL:EIL99099.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
dioxygenase, isopenicillin N synthase
scnpilot_solids1_trim150_scaffold_525_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22054..23406)
DNA (1353bp) protein (451aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Phosphoglucosamine mutase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXF8_9GAMM rbh
phosphoglucosamine mutase rbh
scnpilot_solids1_trim150_scaffold_525_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23456..24364)
DNA (909bp) protein (303aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Dihydropteroate synthase n=2 Tax=Rhodanobacter denitrificans RepID=I4WXF7_9GAMM rbh
dihydropteroate synthase rbh
scnpilot_solids1_trim150_scaffold_525_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24403..24969)
DNA (567bp) protein (189aa)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Oligoribonuclease n=1 Tax=Rhodanobacter denitrificans RepID=I4WXF6_9GAMM rbh
oligoribonuclease (3'->5' exoribonuclease) rbh
scnpilot_solids1_trim150_scaffold_525_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25041..26483
DNA (1443bp) protein (481aa)
exonuclease I (EC:3.1.11.1)
Exodeoxyribonuclease I {ECO:0000256|PIRNR:PIRNR000977}; EC=3.1.11.1 {ECO:0000256|PIRNR:PIRNR000977};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Exonuclease I n=1 Tax=Rhodanobacter denitrificans RepID=I4WXF5_9GAMM rbh
Displaying items 1-30 of 130 in total

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