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scnpilot_solids1_trim150_scaffold_543

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Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_543_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..355
DNA (354bp) protein (118aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU44_9GAMM
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter {ECO:0000313|EMBL:EIL90735.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
scnpilot_solids1_trim150_scaffold_543_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

355..522
DNA (168bp) protein (56aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL27_9GAMM
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter {ECO:0000313|EMBL:EIL87918.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_543_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

524..1978
DNA (1455bp) protein (485aa)
NodT family efflux transporter outer membrane lipoprotein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU45_9GAMM
efflux transporter, outer membrane factor lipoprotein, NodT family rbh
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:AGG87256.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_543_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1975..2709
DNA (735bp) protein (245aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodanobacter denitrificans RepID=I4WUQ0_9GAMM
short-chain dehydrogenase of unknown substrate specificity
Uncharacterized protein {ECO:0000313|EMBL:AGG87255.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_543_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2738..3226
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Erwinia toletana RepID=UPI00034CD426
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_543_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3241..3741)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU47_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_543_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4038..4961)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUP8_9GAMM rbh
putative metal-dependent hydrolase rbh
Putative metal-dependent hydrolase {ECO:0000313|EMBL:AGG87253.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_543_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5056..5892
DNA (837bp) protein (279aa)
HTH-type transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WUP7_9GAMM rbh
transcriptional regulator rbh
Transcriptional regulator {ECO:0000313|EMBL:AGG87252.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_543_9
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6116..7873
DNA (1758bp) protein (586aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F07DED rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN44960.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
periplasmic component of the Tol biopolymer transport system
scnpilot_solids1_trim150_scaffold_543_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7973..9061
DNA (1089bp) protein (363aa)
Signal transduction histidine kinase LytS n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU49_9GAMM
Signal transduction histidine kinase LytS {ECO:0000313|EMBL:EIL90740.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
signal transduction histidine kinase LytS
scnpilot_solids1_trim150_scaffold_543_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9058..9813
DNA (756bp) protein (252aa)
LytTR family two component transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU50_9GAMM
LytTR family two component transcriptional regulator {ECO:0000313|EMBL:EIL90741.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LytTR family two component transcriptional regulator; K02477 two-component system, LytT family, response regulator
scnpilot_solids1_trim150_scaffold_543_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9966..10559
DNA (594bp) protein (198aa)
Large protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU51_9GAMM rbh
Large protein {ECO:0000313|EMBL:EIL90742.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
A nuclease of the HNH/ENDO VII superwith conserved AHH family protein
scnpilot_solids1_trim150_scaffold_543_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10570..11142
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUP5_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG87251.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_543_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11389..13707)
DNA (2319bp) protein (773aa)
type I restriction enzyme subunit; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] rbh
Type I restriction enzyme subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU53_9GAMM rbh
Type I restriction enzyme subunit {ECO:0000313|EMBL:EIL90744.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_543_15
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13704..14018)
DNA (315bp) protein (105aa)
Putative transcriptional regulator n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HL69_PSEUO
Transcriptional regulator {ECO:0000313|EMBL:ETM63350.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_543_16
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14023..14361)
DNA (339bp) protein (113aa)
Addiction module killer protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HM90_PSEUO
addiction module killer protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
scnpilot_solids1_trim150_scaffold_543_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14414..14839)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU56_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90747.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_543_18
Litoreibacter arenae, Litoreibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14836..16068)
DNA (1233bp) protein (411aa)
Type I restriction-modification system, specificity subunit S {ECO:0000313|EMBL:EPX81458.1}; EC=3.1.21.3 {ECO:0000313|EMBL:EPX81458.1};; TaxID=1123360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Litoreibacter.;" source="Litoreibacter arenae DSM 19593.;"
type 1 restriction-modification system specificity subunit; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3] rbh
Type I restriction-modification system, specificity subunit S n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QPE0_9RHOB rbh
scnpilot_solids1_trim150_scaffold_543_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16077..17531)
DNA (1455bp) protein (485aa)
type I restriction enzyme methyltransferase subunit; K03427 type I restriction enzyme M protein [EC:2.1.1.72] rbh
Type I restriction enzyme methyltransferase subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU58_9GAMM rbh
Type I restriction enzyme methyltransferase subunit {ECO:0000313|EMBL:EIL90749.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_543_20
unknown

Not on your lists

17844..18311
DNA (468bp) protein (156aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_543_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18713..20053
DNA (1341bp) protein (447aa)
Sugar-binding glycoside hydrolase family 2 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVN9_9GAMM
Sugar-binding glycoside hydrolase family 2 {ECO:0000313|EMBL:EIL91280.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_543_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20217..21176
DNA (960bp) protein (320aa)
Periplasmic component of the Tol biopolymer transport system n=1 Tax=Rhodanobacter denitrificans RepID=M4NHD7_9GAMM rbh
periplasmic component of the Tol biopolymer transport system rbh
Periplasmic component of the Tol biopolymer transport system {ECO:0000313|EMBL:AGG87246.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_543_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21227..22264
DNA (1038bp) protein (346aa)
Periplasmic component of the Tol biopolymer transport system n=1 Tax=Rhodanobacter denitrificans RepID=M4NA33_9GAMM rbh
periplasmic component of the Tol biopolymer transport system rbh
Periplasmic component of the Tol biopolymer transport system {ECO:0000313|EMBL:AGG87245.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_543_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22297..22656)
DNA (360bp) protein (120aa)
Mannose-6-phosphate isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUN8_9GAMM
mannose-6-phosphate isomerase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_543_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22715..23875)
DNA (1161bp) protein (387aa)
Putative permease (Fragment) n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WC14_9GAMM rbh
Putative permease {ECO:0000313|EMBL:EIL97005.1}; Flags: Fragment;; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative permease
scnpilot_solids1_trim150_scaffold_543_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23872..24195)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WA99_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96390.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_543_27
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24192..24662)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NA30_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_543_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24686..25048)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUN4_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87239.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_543_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25104..25259)
DNA (156bp) protein (52aa)
UPF0391 membrane protein UUC_07426 n=1 Tax=Rhodanobacter denitrificans RepID=I4WUN3_9GAMM
Protein of unknown function (DUF1328)
UPF0391 membrane protein R2APBS1_0050 {ECO:0000256|HAMAP-Rule:MF_01361}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_543_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25410..26033)
DNA (624bp) protein (208aa)
Phospholipid-binding protein, PBP family n=1 Tax=Rhodanobacter denitrificans RepID=M4NBT4_9GAMM rbh
phospholipid-binding protein, PBP family rbh
Phospholipid-binding protein, PBP family {ECO:0000313|EMBL:AGG87237.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 1-30 of 59 in total

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