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scnpilot_solids1_trim150_scaffold_1136

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1136_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..1327
DNA (1326bp) protein (442aa)
CTP synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPH2_9GAMM
CTP synthase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1136_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1324..2160
DNA (837bp) protein (279aa)
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WS76_9GAMM rbh
3-deoxy-8-phosphooctulonate synthase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1136_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2223..3476
DNA (1254bp) protein (418aa)
enolase (EC:4.2.1.11)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Enolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WS77_9GAMM
scnpilot_solids1_trim150_scaffold_1136_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3437..3772
DNA (336bp) protein (112aa)
Cell division protein FtsB n=1 Tax=Rhodanobacter denitrificans RepID=I4WS78_9GAMM
septum formation initiator
Cell division protein FtsB {ECO:0000256|HAMAP-Rule:MF_00599, ECO:0000256|SAAS:SAAS00014481}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1136_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3769..4464
DNA (696bp) protein (232aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WS79_9GAMM rbh
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase rbh
scnpilot_solids1_trim150_scaffold_1136_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4464..4937
DNA (474bp) protein (158aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxy
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPH7_9GAMM rbh
scnpilot_solids1_trim150_scaffold_1136_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4934..6328
DNA (1395bp) protein (465aa)
Magnesium transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPH8_9GAMM rbh
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Mg2+ transporter MgtE rbh
scnpilot_solids1_trim150_scaffold_1136_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6380..7390
DNA (1011bp) protein (337aa)
tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseudouridylate synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA-uridine isomerase D {ECO:0000256|HAMAP-Rule:MF_01082}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tRNA pseudouridine synthase D n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPH9_9GAMM rbh
tRNA pseudouridine synthase, TruD family rbh
scnpilot_solids1_trim150_scaffold_1136_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7537..8082)
DNA (546bp) protein (182aa)
Smr domain protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR48_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89380.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1136_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8235..9032
DNA (798bp) protein (266aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
5'-nucleotidase SurE n=1 Tax=Rhodanobacter denitrificans RepID=M4NEZ4_9GAMM rbh
5'/3'-nucleotidase SurE rbh
scnpilot_solids1_trim150_scaffold_1136_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9036..10289
DNA (1254bp) protein (418aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathip
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW96_9GAMM
protein-L-isoaspartate and D-aspartate O-methyltransferase
scnpilot_solids1_trim150_scaffold_1136_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10316..11314
DNA (999bp) protein (333aa)
Metalloendopeptidase-like membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NNY3_9GAMM rbh
metalloendopeptidase-like membrane protein rbh
Metalloendopeptidase-like membrane protein {ECO:0000313|EMBL:AGG89376.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1136_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11328..11705)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NET7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89375.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1136_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11705..12001)
DNA (297bp) protein (99aa)
Putative RNA-binding protein containing KH domain, possibly ribosomal protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR54_9GAMM
putative RNA-binding protein, YhbY family
Putative RNA-binding protein, YhbY family {ECO:0000313|EMBL:AGG89374.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1136_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12083..12736
DNA (654bp) protein (218aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
23S rRNA methylase (EC:2.1.1.-)
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPI8_9GAMM
scnpilot_solids1_trim150_scaffold_1136_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12729..14687
DNA (1959bp) protein (653aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
membrane protease FtsH catalytic subunit (EC:3.4.24.-) rbh
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Rhodanobacter denitrificans RepID=M4NGZ8_9GAMM rbh
scnpilot_solids1_trim150_scaffold_1136_trna_1
unknown

Not on your lists

14957..15030
DNA (74bp)
transferRNA Arg
scnpilot_solids1_trim150_scaffold_1136_trna_2
unknown

Not on your lists

15211..15284
DNA (74bp)
transferRNA Pro
scnpilot_solids1_trim150_scaffold_1136_trna_3
unknown

Not on your lists

15313..15386
DNA (74bp)
transferRNA Arg
scnpilot_solids1_trim150_scaffold_1136_trna_4
unknown

Not on your lists

15404..15477
DNA (74bp)
transferRNA His
scnpilot_solids1_trim150_scaffold_1136_trna_5
unknown

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15500..15572
DNA (73bp)
transferRNA Lys
scnpilot_solids1_trim150_scaffold_1136_trna_6
unknown

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15832..15913
DNA (82bp)
transferRNA Leu
scnpilot_solids1_trim150_scaffold_1136_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15974..17266
DNA (1293bp) protein (431aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Trigger factor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPJ0_9GAMM rbh
trigger factor rbh
scnpilot_solids1_trim150_scaffold_1136_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17300..17929
DNA (630bp) protein (210aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92) rbh
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPJ1_9GAMM rbh
scnpilot_solids1_trim150_scaffold_1136_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18643..19113
DNA (471bp) protein (157aa)
endopeptidase Clp ATP-binding regulatory subunit ClpX (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPJ2_9GAMM
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_1136_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19287..21761
DNA (2475bp) protein (825aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Lon protease n=1 Tax=Rhodanobacter denitrificans RepID=I4WR60_9GAMM rbh
ATP-dependent proteinase rbh
scnpilot_solids1_trim150_scaffold_1136_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22107..22379
DNA (273bp) protein (91aa)
Bacterial nucleoid DNA-binding protein n=3 Tax=Rhodanobacter RepID=I4WR61_9GAMM
bacterial nucleoid DNA-binding protein
Bacterial nucleoid DNA-binding protein {ECO:0000313|EMBL:AGG89367.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1136_trna_7
unknown

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22399..22470
DNA (72bp)
transferRNA Val
scnpilot_solids1_trim150_scaffold_1136_trna_8
unknown

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22483..22556
DNA (74bp)
transferRNA Asp
scnpilot_solids1_trim150_scaffold_1136_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22642..24543
DNA (1902bp) protein (634aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Parvulin-like peptidyl-prolyl isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR62_9GAMM rbh
parvulin-like peptidyl-prolyl isomerase rbh
Displaying items 1-30 of 72 in total

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