ggKbase home page

scnpilot_solids1_trim150_scaffold_1387

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1387_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3..299)
DNA (297bp) protein (99aa)
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2
DNA-directed RNA polymerase subunit alpha n=1 Tax=Segetibacter koreensis RepID=UPI00036A86EE
scnpilot_solids1_trim150_scaffold_1387_2
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(408..1013)
DNA (606bp) protein (202aa)
30S ribosomal protein S4 n=1 Tax=Segetibacter koreensis RepID=UPI000377E21A rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 rbh
scnpilot_solids1_trim150_scaffold_1387_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(1151..1549)
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=1 Tax=Niabella soli DSM 19437 RepID=H1NUG6_9SPHI
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
scnpilot_solids1_trim150_scaffold_1387_4
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(1718..2098)
DNA (381bp) protein (127aa)
30S ribosomal protein S13 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU95_CHIPD
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_1387_5
Dokdonia sp. 4H-3-7-5, Dokdonia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2158..2274)
DNA (117bp) protein (39aa)
50S ribosomal protein L36 n=4 Tax=Flavobacteriaceae RepID=A3U7N8_CROAH
50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=983548 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Dokdonia.;" source="Dokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5)).;"
scnpilot_solids1_trim150_scaffold_1387_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2309..2527)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU93_CHIPD
translation initiation factor IF-1; K02518 translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_1387_7
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2688..3812)
DNA (1125bp) protein (375aa)
acyl-CoA dehydrogenase n=1 Tax=Saccharopolyspora erythraea RepID=UPI0001D30DAD rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EQD85586.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
acyl-CoA dehydrogenase
scnpilot_solids1_trim150_scaffold_1387_8
Tamlana sedimentorum, Tamlana, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3921..4787)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Flavobacteriaceae bacterium P7-3-5 RepID=UPI0003793EC5
Transcriptional regulator {ECO:0000313|EMBL:KJD35659.1}; TaxID=1435349 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana.;" source="Tamlana sedimentorum.;"
putative transcriptional regulator
scnpilot_solids1_trim150_scaffold_1387_9
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4952..6307)
DNA (1356bp) protein (452aa)
phosphodiesterase n=1 Tax=Segetibacter koreensis RepID=UPI000382169E rbh
Phosphodiesterase {ECO:0000313|EMBL:KIA95850.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
type I phosphodiesterase/nucleotide pyrophosphatase rbh
scnpilot_solids1_trim150_scaffold_1387_10
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6321..7532)
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036D9409 rbh
Uncharacterized protein {ECO:0000313|EMBL:ETZ20224.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_1387_11
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7794..8564)
DNA (771bp) protein (257aa)
NLP/P60 protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUW0_CHIPD
NLP/P60 protein
NLP/P60 protein {ECO:0000313|EMBL:ACU62869.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_1387_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8641..9198
DNA (558bp) protein (186aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9P2_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW00235.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_1387_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9249..9608
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9P3_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00236.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_1387_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9684..10181)
DNA (498bp) protein (166aa)
phosphoribosyltransferase; K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
Phosphoribosyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THW6_NIAKG
Phosphoribosyltransferase {ECO:0000313|EMBL:AEV98561.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_1387_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10350..11681
DNA (1332bp) protein (444aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003735F7F rbh
Transmembrane (4fe-4S) cluster-binding oxidoreductase {ECO:0000313|EMBL:AHF14134.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1387_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11784..12227)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036BEFFB
single-strand binding protein; K03111 single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070, ECO:0000256|RuleBase:RU000524}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_1387_17
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12325..13080)
DNA (756bp) protein (252aa)
XRE family transcriptional regulator n=1 Tax=Segetibacter koreensis RepID=UPI000373341B
XRE family transcriptional regulator {ECO:0000313|EMBL:KIC95587.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
helix-turn-helix domain-containing protein
scnpilot_solids1_trim150_scaffold_1387_18
unknown

Not on your lists

comp(13303..13521)
DNA (219bp) protein (73aa)

This feature has no annotations

Displaying 18 items

View Taxonomy