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scnpilot_solids1_trim150_scaffold_608

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_608_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1..567)
DNA (567bp) protein (189aa)
urocanate hydratase (EC:4.2.1.49); K01712 urocanate hydratase [EC:4.2.1.49]
Urocanate hydratase id=4748846 bin=GWC2_Methylomirabilis_70_16 species=Sporosarcina newyorkensis genus=Sporosarcina taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
scnpilot_solids1_trim150_scaffold_608_2
Arthrobacter crystallopoietes, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(656..2311)
DNA (1656bp) protein (552aa)
histidine ammonia-lyase (EC:4.3.1.3); K01745 histidine ammonia-lyase [EC:4.3.1.3]
Histidine ammonia-lyase n=1 Tax=Arthrobacter crystallopoietes BAB-32 RepID=N1UVV4_9MICC
Histidine ammonia-lyase {ECO:0000313|EMBL:EMY33185.1}; TaxID=1246476 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter crystallopoietes BAB-32.;"
scnpilot_solids1_trim150_scaffold_608_3
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2386..3153
DNA (768bp) protein (256aa)
Transcriptional regulator, IclR family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AFZ3_9ACTN
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AIY15707.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
transcriptional regulator
scnpilot_solids1_trim150_scaffold_608_4
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3214..4488)
DNA (1275bp) protein (425aa)
FMN-dependent alpha-hydroxy acid dehydrogenase; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
FMN-dependent alpha-hydroxy acid dehydrogenase n=1 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PV50_KRIFD
Lactate dehydrogenase {ECO:0000313|EMBL:KGH47567.1}; TaxID=1522368 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
scnpilot_solids1_trim150_scaffold_608_5
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4522..5325)
DNA (804bp) protein (268aa)
Glutamine transport ATP-binding protein GlnQ n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0KVN8_9ACTO rbh
Glutamine transport ATP-binding protein GlnQ {ECO:0000313|EMBL:CCH15635.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
arginine/ornithine transport ATP-binding protein
scnpilot_solids1_trim150_scaffold_608_6
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5322..6341)
DNA (1020bp) protein (340aa)
Amino acid ABC transporter membrane protein (Fragment) n=1 Tax=Arthrobacter crystallopoietes BAB-32 RepID=N1UZE1_9MICC
ABC amino acid transporter, permease component {ECO:0000313|EMBL:AIY19628.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_608_7
Arthrobacter crystallopoietes, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6338..7384)
DNA (1047bp) protein (349aa)
ABC transporter substrate-binding protein n=1 Tax=Arthrobacter crystallopoietes BAB-32 RepID=N1URZ2_9MICC
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EMY33186.1}; TaxID=1246476 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter crystallopoietes BAB-32.;"
family 3 extracellular solute-binding protein; K02030 polar amino acid transport system substrate-binding protein
scnpilot_solids1_trim150_scaffold_608_8
Nocardia seriolae, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7643..9193)
DNA (1551bp) protein (517aa)
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI0003649EB1 rbh
ABC transporter {ECO:0000313|EMBL:GAM51269.1}; TaxID=37332 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia seriolae.;"
ABC transporter
scnpilot_solids1_trim150_scaffold_608_9
Thermanaerovibrio velox, Thermanaerovibrio, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(9199..10167)
DNA (969bp) protein (323aa)
ABC transporter permease n=1 Tax=Synergistetes bacterium JGI 0000079-D21 RepID=UPI0003B3B8EB
ABC-type branched-chain amino acid transport system, permease component {ECO:0000313|EMBL:EHM09531.1}; TaxID=926567 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Thermanaerovibrio.;" source="Thermanaerovibrio velox DSM 12556.;"
amino acid ABC transporter; K01998 branched-chain amino acid transport system permease protein
scnpilot_solids1_trim150_scaffold_608_10

Not on your lists

comp(10164..11030)
DNA (867bp) protein (289aa)
Marine sediment metagenome DNA, contig: S03H2_C01054 {ECO:0000313|EMBL:GAH28546.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Branched-chain amino acid ABC-type transport system, permease component id=4493426 bin=GWC2_Methylomirabilis_70_16 species=Thermanaerovibrio velox genus=Thermanaerovibrio taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
scnpilot_solids1_trim150_scaffold_608_11
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11150..12499)
DNA (1350bp) protein (450aa)
Receptor family ligand-binding protein n=4 Tax=Clostridium RepID=E9SJF5_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA95822.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
scnpilot_solids1_trim150_scaffold_608_12
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12825..15176
DNA (2352bp) protein (784aa)
hypothetical protein n=1 Tax=Dasania marina RepID=UPI0003787379 rbh
diguanylate cyclase/phosphodiesterase
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
scnpilot_solids1_trim150_scaffold_608_13
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15467..16732
DNA (1266bp) protein (422aa)
aspartate kinase; K00928 aspartate kinase [EC:2.7.2.4] rbh
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Aspartokinase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X8D2_NAKMY rbh
scnpilot_solids1_trim150_scaffold_608_14
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16735..17850
DNA (1116bp) protein (372aa)
aspartate semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=446469 species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 5176
aspartate-semialdehyde dehydrogenase n=1 Tax=Promicromonospora sukumoe RepID=UPI0003828A59 rbh
scnpilot_solids1_trim150_scaffold_608_15
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17975..18877)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XQ96_MICPN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK36927.1}; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
scnpilot_solids1_trim150_scaffold_608_16
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19146..20792
DNA (1647bp) protein (549aa)
Acetyl-coenzyme A synthetase {ECO:0000313|EMBL:EWC59936.1}; EC=6.2.1.1 {ECO:0000313|EMBL:EWC59936.1};; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
AMP-dependent synthetase n=1 Tax=Amycolatopsis methanolica RepID=UPI0003654A8B rbh
acs; acetyl-CoA synthetase rbh
scnpilot_solids1_trim150_scaffold_608_17
unknown

Not on your lists

comp(20806..21114)
DNA (309bp) protein (103aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_608_18
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21111..21608)
DNA (498bp) protein (166aa)
Transcriptional regulator, MarR family n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWI0_RUBXD
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABG04248.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
scnpilot_solids1_trim150_scaffold_608_19
unknown

Not on your lists

21684..21836
DNA (153bp) protein (51aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_608_20
unknown

Not on your lists

21870..22238
DNA (369bp) protein (123aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_608_21
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22136..23647)
DNA (1512bp) protein (504aa)
Peptidase S9 prolyl oligopeptidase active site domain protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X8E1_NAKMY rbh
peptidase S9 prolyl oligopeptidase active site domain-containing protein rbh
Peptidase S9 prolyl oligopeptidase active site domain protein {ECO:0000313|EMBL:ACV77117.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_608_22
Streptomyces sp. Tu 6176, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24012..24809
DNA (798bp) protein (266aa)
scramblase n=1 Tax=Streptomyces sp. Amel2xE9 RepID=UPI0003707B8F rbh
Scramblase {ECO:0000313|EMBL:EYT82901.1}; TaxID=1470557 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Tu 6176.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_608_23
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24830..25303)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RU66_BLASD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG05673.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
scnpilot_solids1_trim150_scaffold_608_24
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(25300..25698)
DNA (399bp) protein (133aa)
Catechol 2,3 dioxygenase n=1 Tax=Arthrobacter gangotriensis Lz1y RepID=M7MPY3_9MICC
Metallothiol transferase FosB {ECO:0000313|EMBL:KJE76094.1}; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Ferrimicrobium acidiphilum DSM 19497.;"
lactoylglutathione lyase-like lyase
scnpilot_solids1_trim150_scaffold_608_25
Cellulosimicrobium sp. MM, Cellulosimicrobium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25844..26281
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Isoptericola variabilis (strain 225) RepID=F6FT09_ISOV2
Uncharacterized protein {ECO:0000313|EMBL:KFD43701.1}; TaxID=1523621 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Cellulosimicrobium.;" source="Cellulosimicrobium sp. MM.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_608_26
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26278..26979)
DNA (702bp) protein (234aa)
deaminase-reductase domain-containing protein; K00082 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:1.1.1.193]
deaminase reductase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B78900 rbh
Bifunctional deaminase-reductase domain protein {ECO:0000313|EMBL:ABL81196.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
scnpilot_solids1_trim150_scaffold_608_27
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26976..28112)
DNA (1137bp) protein (379aa)
Glycosyl transferase group 1 n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XK64_NAKMY
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACV76747.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_608_28
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28102..28491)
DNA (390bp) protein (130aa)
6-pyruvoyl tetrahydropterin synthase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B6F9D6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP55007.1}; TaxID=369723 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440).;"
scnpilot_solids1_trim150_scaffold_608_29
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28479..29492)
DNA (1014bp) protein (338aa)
dehydrogenase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B50FFB rbh
putative dehydrogenase rbh
Putative dehydrogenase {ECO:0000313|EMBL:ACY98292.1}; TaxID=471852 species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
scnpilot_solids1_trim150_scaffold_608_30
Amycolicicoccus subflavus, Amycolicicoccus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29711..30376
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B5F19C
putative sam-dependent methyltransferase protein
Putative sam-dependent methyltransferase protein {ECO:0000313|EMBL:AEF42149.1}; TaxID=443218 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Amycolicicoccus.;" source="Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1).;"
Displaying items 1-30 of 52 in total

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