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scnpilot_solids1_trim150_scaffold_417

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_417_1
unknown

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132..380
DNA (249bp) protein (83aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_417_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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508..1353
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PHZ9_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU61871.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_417_3
unknown

Not on your lists

1451..2458
DNA (1008bp) protein (336aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_417_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2791..8181)
DNA (5391bp) protein (1797aa)
WGR domain-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIY7_NIAKG rbh
WGR domain-containing protein {ECO:0000313|EMBL:AEV97504.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
WGR domain-containing protein rbh
scnpilot_solids1_trim150_scaffold_417_5
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8210..9400)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003687B1C rbh
Peptidase M48 {ECO:0000313|EMBL:KIC90943.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
peptidase M48 Ste24p rbh
scnpilot_solids1_trim150_scaffold_417_6
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10004..11110
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5BWE9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ERM82208.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_417_7
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(11107..12162)
DNA (1056bp) protein (352aa)
Integrase catalytic region n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QV88_SPILD
Integrase catalytic region
Integrase catalytic region {ECO:0000313|EMBL:ADB42720.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_solids1_trim150_scaffold_417_8
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12159..12476)
DNA (318bp) protein (106aa)
Transposase IS3/IS911 family protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QV87_SPILD
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ADB42719.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_solids1_trim150_scaffold_417_9
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(13217..13969)
DNA (753bp) protein (251aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XYN4_PEDHD rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AHM61153.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
short-chain dehydrogenase/reductase SDR rbh
scnpilot_solids1_trim150_scaffold_417_10
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(14091..17033)
DNA (2943bp) protein (981aa)
Uncharacterized protein id=4123416 bin=GWA2_Bacteroidetes_A19_40_15 species=Bacteroides fragilis genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_A19_40_15 organism_group=Bacteroidetes rbh
hypothetical protein rbh
Tax=GWA2_Bacteroidetes_40_15_curated
scnpilot_solids1_trim150_scaffold_417_11
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17093..20221)
DNA (3129bp) protein (1043aa)
Uncharacterized protein {ECO:0000313|EMBL:KIA89464.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
Uncharacterized protein id=3100931 bin=GWC2_Bacteroidetes_40_22 species=Flavobacterium sp. F52 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
hypothetical protein
scnpilot_solids1_trim150_scaffold_417_12
unknown

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comp(20268..22706)
DNA (2439bp) protein (813aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_417_13
Bacteroides sp. CAG:530, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22751..24064)
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:530 RepID=R6CHR8_9BACE rbh
Uncharacterized protein {ECO:0000313|EMBL:CDA75170.1}; TaxID=1262741 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:530.;"
fibronectin, type III domain-containing protein
scnpilot_solids1_trim150_scaffold_417_14
Bacteroides sp. CAG:530, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24106..25251)
DNA (1146bp) protein (382aa)
Sulfatase modifying factor 2 n=1 Tax=Bacteroides sp. CAG:530 RepID=R6CUK9_9BACE
Sulfatase modifying factor 2 {ECO:0000313|EMBL:CDA75171.1}; TaxID=1262741 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:530.;"
sulfatase-modifying factor protein
scnpilot_solids1_trim150_scaffold_417_15
Bacteroides sp. CAG:530, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25333..26952)
DNA (1620bp) protein (540aa)
RagB/SusD domain protein n=1 Tax=Bacteroides sp. CAG:530 RepID=R6DBD9_9BACE rbh
RagB/SusD domain protein {ECO:0000313|EMBL:CDA75172.1}; TaxID=1262741 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:530.;"
ragb/susd domain protein rbh
scnpilot_solids1_trim150_scaffold_417_16
Bacteroides sp. CAG:530, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26967..30389)
DNA (3423bp) protein (1141aa)
TonB-dependent receptor plug n=1 Tax=Bacteroides sp. CAG:530 RepID=R6CET2_9BACE rbh
TonB-dependent receptor plug {ECO:0000313|EMBL:CDA75173.1}; TaxID=1262741 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:530.;"
tonb-dependent receptor plug rbh
scnpilot_solids1_trim150_scaffold_417_17
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30513..31718)
DNA (1206bp) protein (402aa)
Anti-FecI sigma factor, FecR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TM28_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC95455.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
anti-FecI sigma factor FecR
scnpilot_solids1_trim150_scaffold_417_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31788..32390)
DNA (603bp) protein (201aa)
RNA polymerase sigma factor n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7R3_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_417_19
Odoribacter splanchnicus, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33386..34237)
DNA (852bp) protein (284aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=709991 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter.;" source="Odoribacter splanchnicus (strain ATCC 29572 / DSM 20712 / JCM 15291 /; NCTC 10825 / 1651/6) (Bacteroides splanchnicus).;"
hypothetical protein n=1 Tax=Riemerella columbina RepID=UPI000373CBCE
CRISPR-associated protein Cas1; K15342 CRISP-associated protein Cas1
scnpilot_solids1_trim150_scaffold_417_20
Bacteroidetes bacterium oral taxon 272, Bacteroidetes, Bacteria

Not on your lists

comp(34366..34896)
DNA (531bp) protein (177aa)
CRISPR-associated protein Cas4 n=1 Tax=Bacteroidetes bacterium oral taxon 272 str. F0290 RepID=S8GYI7_9BACT
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:EPT33619.1}; TaxID=888054 species="Bacteria; Bacteroidetes.;" source="Bacteroidetes bacterium oral taxon 272 str. F0290.;"
cas4; CRISPR-associated protein Cas4; K07464 putative RecB family exonuclease
scnpilot_solids1_trim150_scaffold_417_21
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(34906..36102)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GQB8_9SPHI rbh
AAA ATPase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_417_22
unknown

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comp(36639..36728)
DNA (90bp) protein (30aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_417_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

36789..37343
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TK13_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02951.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying 23 items

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