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SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11

In projects: SCNPILOT_SOLID_1_TRIM150

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK

Properties

Avg. coverage: 11.36 Longest contig: 223.48 Kbp Bin length: 5.14 Mbp GC content: 42.47 %
Contigs count: 122 Features count: 4418 rRNAs count: 0 tRNAs count: 40

Genome completeness

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38
Displaying items 1-50 of 122 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids1_trim150_scaffold_20
Order: Sphingobacteriales (63.07%)
176 223483 bp 43.72 12.10 89.65
scnpilot_solids1_trim150_scaffold_31
Order: Sphingobacteriales (75.97%)
156 189856 bp 42.32 11.24 88.90
scnpilot_solids1_trim150_scaffold_90
Order: Sphingobacteriales (61.6%)
127 161546 bp 42.73 11.21 91.08
scnpilot_solids1_trim150_scaffold_107
Phylum: Bacteroidetes (89.6%)
125 161828 bp 43.04 11.39 88.52
scnpilot_solids1_trim150_scaffold_64
Order: Sphingobacteriales (69.17%)
121 124400 bp 43.47 12.30 87.80
scnpilot_solids1_trim150_scaffold_52
Order: Sphingobacteriales (60.68%)
117 137834 bp 42.54 11.43 87.98
scnpilot_solids1_trim150_scaffold_57
Order: Sphingobacteriales (58.18%)
110 132793 bp 42.02 11.24 89.78
scnpilot_solids1_trim150_scaffold_95
Order: Sphingobacteriales (54.9%)
103 101858 bp 42.17 11.27 86.64
scnpilot_solids1_trim150_scaffold_89
Order: Sphingobacteriales (65.66%)
101 105192 bp 42.22 10.52 87.07
scnpilot_solids1_trim150_scaffold_184
Order: Sphingobacteriales (54.17%)
96 118378 bp 42.71 11.35 88.90
scnpilot_solids1_trim150_scaffold_115
Order: Sphingobacteriales (70.79%)
94 89933 bp 41.38 11.04 87.78
scnpilot_solids1_trim150_scaffold_92
Order: Sphingobacteriales (64.77%)
88 112542 bp 42.28 11.06 88.66
scnpilot_solids1_trim150_scaffold_119
Order: Sphingobacteriales (52.44%)
82 87877 bp 43.94 11.84 89.50
scnpilot_solids1_trim150_scaffold_138
Order: Sphingobacteriales (65.22%)
70 77722 bp 41.93 10.87 90.93
scnpilot_solids1_trim150_scaffold_125
Order: Sphingobacteriales (78.46%)
66 85240 bp 42.27 10.98 90.37
scnpilot_solids1_trim150_scaffold_135
Phylum: Bacteroidetes (70.77%)
65 79443 bp 42.92 11.23 88.15
scnpilot_solids1_trim150_scaffold_151
Order: Sphingobacteriales (56.45%)
62 72732 bp 43.05 11.32 91.55
scnpilot_solids1_trim150_scaffold_219
Order: Sphingobacteriales (61.29%)
62 64566 bp 43.08 10.67 89.20
scnpilot_solids1_trim150_scaffold_150
Order: Sphingobacteriales (69.49%)
61 73662 bp 42.15 11.18 88.25
scnpilot_solids1_trim150_scaffold_189
Order: Sphingobacteriales (77.59%)
60 62931 bp 41.06 10.49 85.69
scnpilot_solids1_trim150_scaffold_199
Order: Sphingobacteriales (60.34%)
59 84100 bp 42.98 11.84 87.12
scnpilot_solids1_trim150_scaffold_243
Phylum: Bacteroidetes (65.52%)
59 61633 bp 40.91 11.43 91.64
scnpilot_solids1_trim150_scaffold_273
Order: Sphingobacteriales (81.03%)
59 62057 bp 41.35 11.28 90.79
scnpilot_solids1_trim150_scaffold_171
Phylum: Bacteroidetes (92.73%)
55 66308 bp 43.19 12.27 85.94
scnpilot_solids1_trim150_scaffold_175
Order: Sphingobacteriales (53.7%)
55 65186 bp 42.24 11.17 87.77
scnpilot_solids1_trim150_scaffold_224
Phylum: Bacteroidetes (83.33%)
54 59946 bp 43.21 10.62 90.79
scnpilot_solids1_trim150_scaffold_226
Phylum: Bacteroidetes (68.52%)
54 57836 bp 39.92 11.95 80.71
scnpilot_solids1_trim150_scaffold_194
Phylum: Bacteroidetes (69.23%)
52 61776 bp 43.05 12.16 88.07
scnpilot_solids1_trim150_scaffold_225
Order: Sphingobacteriales (67.31%)
52 57878 bp 42.08 11.09 87.46
scnpilot_solids1_trim150_scaffold_511
Phylum: Bacteroidetes (78.43%)
52 53466 bp 42.23 11.15 88.87
scnpilot_solids1_trim150_scaffold_401
Order: Sphingobacteriales (76.47%)
51 54804 bp 41.72 10.86 89.81
scnpilot_solids1_trim150_scaffold_172
Order: Sphingobacteriales (68%)
50 66225 bp 43.11 11.98 88.87
scnpilot_solids1_trim150_scaffold_206
Order: Sphingobacteriales (60.42%)
48 59709 bp 41.69 10.56 89.01
scnpilot_solids1_trim150_scaffold_204
Phylum: Bacteroidetes (80.85%)
47 60240 bp 41.98 12.06 90.05
scnpilot_solids1_trim150_scaffold_218
Order: Sphingobacteriales (52.27%)
44 58509 bp 42.29 10.81 90.50
scnpilot_solids1_trim150_scaffold_315
Order: Sphingobacteriales (70.45%)
44 46028 bp 40.76 10.98 85.55
scnpilot_solids1_trim150_scaffold_278
Phylum: Bacteroidetes (79.07%)
43 50348 bp 42.53 11.82 86.50
scnpilot_solids1_trim150_scaffold_395
Order: Sphingobacteriales (59.52%)
42 44027 bp 42.27 9.85 83.66
scnpilot_solids1_trim150_scaffold_390
Order: Sphingobacteriales (56.1%)
41 39184 bp 42.98 11.49 84.42
scnpilot_solids1_trim150_scaffold_397
Order: Sphingobacteriales (75.61%)
41 44727 bp 42.59 11.37 85.73
scnpilot_solids1_trim150_scaffold_291
Phylum: Bacteroidetes (55%)
40 48921 bp 43.95 12.40 87.26
scnpilot_solids1_trim150_scaffold_355
Order: Sphingobacteriales (57.89%)
39 42436 bp 39.98 10.72 85.19
scnpilot_solids1_trim150_scaffold_394
Order: Sphingobacteriales (71.43%)
38 38792 bp 42.03 11.21 86.55
scnpilot_solids1_trim150_scaffold_429
Phylum: Bacteroidetes (59.46%)
37 36639 bp 41.68 11.52 87.73
scnpilot_solids1_trim150_scaffold_299
Order: Sphingobacteriales (54.05%)
37 47896 bp 42.72 12.09 90.98
scnpilot_solids1_trim150_scaffold_408
Order: Sphingobacteriales (72.22%)
36 38038 bp 43.27 11.54 88.37
scnpilot_solids1_trim150_scaffold_259
Phylum: Bacteroidetes (55.56%)
36 52555 bp 41.69 11.15 89.59
scnpilot_solids1_trim150_scaffold_391
Phylum: Bacteroidetes (71.43%)
35 38984 bp 40.34 12.81 87.49
scnpilot_solids1_trim150_scaffold_660
Order: Sphingobacteriales (59.38%)
33 40747 bp 45.44 10.98 91.49
scnpilot_solids1_trim150_scaffold_260
Order: Sphingobacteriales (51.52%)
33 55611 bp 42.65 11.95 92.13
Displaying items 1-50 of 122 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.